RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA800053" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA800053 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28073636 28073636 PRJNA800053_P_NODE_4185_length_438_cov_1.887671_g4022_i0 PRJNA800053 4185 438 1.887671 8.26799898 Chlamydia 810 Bacteria Bacteria 243 4.78e-80   NR EPJ29527.1 1112251 g4022 i0 90.4 1.84931506849315 135 13 92.5 0 2 406 15 149 EPJ29527.1 cytochrome c oxidase subunit 3, partial [Chlamydia psittaci 99DC5] diamond 810 243 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
31065372 31065372 PRJNA800053_P_NODE_14735_length_267_cov_1.572165_g14571_i0 PRJNA800053 14735 267 1.572165 4.19768055 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 96.3 7.789999999999999e-23   NR HSX04336.1 2047756 g14571 i0 47.7 1.9438202247191 86 45 96.6 0 261 4 40 125 HSX04336.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 519 96.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
32267220 32267220 PRJNA800053_P_NODE_13998_length_272_cov_2.678392_g13834_i0 PRJNA800053 13998 272 2.678392 7.28522624 Chlamydiota bacterium 2081524 Bacteria Bacteria 72.4 2e-12   NR MCH9633990.1 2081524 g13834 i0 44.4 0.893382352941177 81 45 89.3 0 255 13 601 681 MCH9633990.1 hypothetical protein [Chlamydiota bacterium] diamond 243 72.4 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
32645981 32645981 PRJNA800053_P_NODE_19460_length_248_cov_0.880000_g19296_i0 PRJNA800053 19460 248 0.88 2.1824 Chlamydiota bacterium 2081524 Bacteria Bacteria 78.6 3.78e-15   NR MCH9631716.1 2081524 g19296 i0 44.4 0.979838709677419 81 45 98 0 244 2 3 83 MCH9631716.1 hypothetical protein [Chlamydiota bacterium] diamond 243 78.6 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;