RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA800053" and tax_phylum = "Candidatus Latescibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA800053 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29327657 29327657 PRJNA800053_P_NODE_23629_length_241_cov_0.916667_g23465_i0 PRJNA800053 23629 241 0.916667 2.20916747 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 42 0.0253   NR RKY72544.1 2053570 g23465 i0 42.9 0.522821576763486 42 21 52.3 1 147 22 46 84 RKY72544.1 MAG: hypothetical protein DRP97_00490 [Candidatus Latescibacterota bacterium] diamond 126 42 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
31634208 31634208 PRJNA800053_P_NODE_19456_length_248_cov_0.880000_g19292_i0 PRJNA800053 19456 248 0.88 2.1824 Candidatus Latescibacteria bacterium ADurb.Bin168 1852850 Bacteria Bacteria 95.1 1.9600000000000003e-21   NR OQB32848.1 1852850 g19292 i0 63 0.979838709677419 81 28 95.6 1 243 7 84 164 OQB32848.1 MAG: hypothetical protein BWY06_03521 [Candidatus Latescibacteria bacterium ADurb.Bin168] diamond 243 95.1 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacteria bacterium ADurb.Bin168

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;