RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA800053" and tax_phylum = "Candidatus Hydrogenedentota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA800053 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29706217 29706217 PRJNA800053_P_NODE_16130_length_258_cov_1.659459_g15966_i0 PRJNA800053 16130 258 1.659459 4.28140422 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 85.5 4.03e-17   NR MBP7431861.1 2030809 g15966 i0 52.2 0.779069767441861 67 32 77.9 0 254 54 530 596 MBP7431861.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 201 85.5 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
30338874 30338874 PRJNA800053_P_NODE_21592_length_244_cov_1.479532_g21428_i0 PRJNA800053 21592 244 1.479532 3.61005808 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 95.9 5.4499999999999996e-24   NR HPO87437.1 2030809 g21428 i0 70.8 0.799180327868853 65 19 79.9 0 8 202 7 71 HPO87437.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 195 95.9 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
30749177 30749177 PRJNA800053_P_NODE_20614_length_246_cov_0.890173_g20450_i0 PRJNA800053 20614 246 0.890173 2.18982558 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 55.1 1.7e-6   NR MCC6798279.1 2030809 g20450 i0 43.3 0.817073170731707 67 29 70.7 1 198 25 101 167 MCC6798279.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 201 55.1 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;