RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA800053" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA800053 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28790842 28790842 PRJNA800053_P_NODE_19187_length_248_cov_0.880000_g19023_i0 PRJNA800053 19187 248 0.88 2.1824 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 57.4 2.76e-7   NR XP_002673895.1 5762 g19023 i0 79.5 0.532258064516129 44 6 50.8 3 30 155 283 325 XP_002673895.1 uncharacterized protein NAEGRDRAFT_51264 [Naegleria gruberi] diamond 132 57.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
32117916 32117916 PRJNA800053_P_NODE_25238_length_204_cov_4.106870_g25074_i0 PRJNA800053 25238 204 4.10687 8.3780148 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62.4 4.09e-10   NR XP_044566787.1 5763 g25074 i0 65 3.05882352941176 40 14 58.8 0 5 124 114 153 XP_044566787.1 uncharacterized protein FDP41_011935 [Naegleria fowleri] diamond 624 62.8 0.993630573248408 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;