RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA800053" and tax_clade = "Candidatus Pacearchaeota"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • Candidatus Pacearchaeota · 3 ✖

bioproject 1

  • PRJNA800053 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28380491 28380491 PRJNA800053_P_NODE_20366_length_246_cov_1.508671_g20202_i0 PRJNA800053 20366 246 1.508671 3.71133066 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 52 1.89e-5   NR MCK9570519.1 2026773 g20202 i0 85.7 0.341463414634146 28 4 34.1 0 208 125 1 28 MCK9570519.1 N4-gp56 family major capsid protein [Candidatus Pacearchaeota archaeon] diamond 84 52 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
30211865 30211865 PRJNA800053_P_NODE_23972_length_241_cov_0.916667_g23808_i0 PRJNA800053 23972 241 0.916667 2.20916747 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 77.8 1.41e-14   NR MCK9569154.1 2026773 g23808 i0 72.3 0.5850622406639 47 13 58.5 0 99 239 29 75 MCK9569154.1 thymidylate synthase [Candidatus Pacearchaeota archaeon] diamond 141 77.8 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
31634210 31634210 PRJNA800053_P_NODE_21336_length_245_cov_0.895349_g21172_i0 PRJNA800053 21336 245 0.895349 2.19360505 Candidatus Pacearchaeota archaeon CG_4_9_14_ 2026773 Archaea Archaea 50.4 7.24e-5   NR PJC44965.1 1974430 g21172 i0 33.3 0.771428571428571 63 38 77.1 1 193 5 330 388 PJC44965.1 MAG: hypothetical protein CO038_00960, partial [Candidatus Pacearchaeota archaeon CG_4_9_14_0_2_um_filter_39_13] diamond 189 50.4 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon CG_4_9_14_0_2_um_filter_39_13

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;