RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA799842" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA799842 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30338787 30338787 PRJNA799842_P_NODE_103712_length_286_cov_1.446009_g102139_i0 PRJNA799842 103712 286 1.446009 4.13558574 Mycoplasmopsis pulmonis 2107 Bacteria Bacteria 84 1.45e-18   NR WP_322536765.1 2107 g102139 i0 80 0.576923076923077 55 11 57.7 0 285 121 57 111 WP_322536765.1 phage holin [Mycoplasmopsis pulmonis] diamond 165 84 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis pulmonis
31033782 31033782 PRJNA799842_P_NODE_148415_length_249_cov_0.875000_g146842_i0 PRJNA799842 148415 249 0.875 2.17875 [Mycoplasma] mobile 2118 Bacteria Bacteria 42.7 0.0384   NR WP_011264862.1 2118 g146842 i0 33.7 1 83 47 90.4 2 229 5 262 344 WP_011264862.1 ATP-binding protein [[Mycoplasma] mobile] diamond 249 42.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma [Mycoplasma] mobile
31127887 31127887 PRJNA799842_P_NODE_154075_length_248_cov_0.880000_g152502_i0 PRJNA799842 154075 248 0.88 2.1824 Mycoplasma sp. 2108 Bacteria Bacteria 71.6 2.61e-12   NR MBD5445845.1 2108 g152502 i0 42.1 0.919354838709677 76 43 91.9 1 2 229 175 249 MBD5445845.1 elongation factor 4 [Mycoplasma sp.] diamond 228 71.6 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;