RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA799842" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA799842 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29896206 29896206 PRJNA799842_P_NODE_80971_length_320_cov_2.040486_g79398_i0 PRJNA799842 80971 320 2.040486 6.5295552 Sweet potato vein clearing virus 995049 Viruses Viruses 48.9 6.15e-4   NR YP_004300274.1 995049 g79398 i0 31.5 1.0125 108 68 96.6 2 313 5 82 188 YP_004300274.1 replicase [Sweet potato vein clearing virus] diamond 324 48.9 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Solendovirus Solendovirus venaipomeae
31349757 31349757 PRJNA799842_P_NODE_78036_length_326_cov_0.940711_g76463_i0 PRJNA799842 78036 326 0.940711 3.06671786 Caulimovirus sp. 2692413 Viruses Viruses 161 1.97e-43   NR QHB15111.1 2692413 g76463 i0 78 1.00306748466258 109 15 99.4 3 325 2 1354 1454 QHB15111.1 ORF2 [Caulimovirus sp.] diamond 327 161 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;