RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA798905" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA798905 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26642370 26642370 PRJNA798905_S_NODE_18141_length_346_cov_5.307692_g17692_i0 PRJNA798905 18141 346 5.307692 18.36461432 Anaerolineae bacterium 2052143 Bacteria Bacteria 44.7 0.0239   NR HIP71703.1 2052143 g17692 i0 28.9 2.7485549132948 76 49 62.4 2 65 280 296 370 HIP71703.1 branched-chain amino acid ABC transporter substrate-binding protein [Anaerolineae bacterium] diamond 951 44.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
27631777 27631777 PRJNA798905_S_NODE_13404_length_389_cov_15.341772_g12955_i0 PRJNA798905 13404 389 15.341772 59.67949308 Chloroflexota 200795 Bacteria Bacteria 213 5.77e-63   NR MCB0162677.1 2052143 g12955 i0 75.2 12.840616966581 129 32 99.5 0 2 388 274 402 MCB0162677.1 asparagine synthase (glutamine-hydrolyzing) [Anaerolineae bacterium] diamond 4995 213 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
31539440 31539440 PRJNA798905_S_NODE_27116_length_290_cov_3.152074_g26667_i0 PRJNA798905 27116 290 3.152074 9.1410146 Chloroflexota bacterium 2026724 Bacteria Bacteria 48.9 1.87e-4   NR MEK9658548.1 2026724 g26667 i0 54 1.22068965517241 50 21 51.7 1 6 155 116 163 MEK9658548.1 ribonuclease HI [Chloroflexota bacterium] diamond 354 48.9 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32172257 32172257 PRJNA798905_S_NODE_3818_length_682_cov_7.182266_g3385_i0 PRJNA798905 3818 682 7.182266 48.98305412 Chloroflexota bacterium 2026724 Bacteria Bacteria 213 1.26e-65   NR RYF28950.1 2026724 g3385 i0 53.8 0.818181818181818 186 85 81.4 1 649 95 54 239 RYF28950.1 MAG: hypothetical protein EOO17_03370 [Chloroflexota bacterium] diamond 558 213 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;