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contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA797655" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 16 ✖

bioproject 1

  • PRJNA797655 · 16 ✖

analysis 1

  • diamond · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18635533 18635533 PRJNA797655_S_NODE_179035_length_189_cov_1.643836_g178430_i0 PRJNA797655 179035 189 1.643836 3.10685004 Caudoviricetes sp. 2832643 Viruses Viruses 52.8 3.92e-7   NR DAY54301.1 2832643 g178430 i0 64.5 0.492063492063492 31 11 49.2 0 189 97 43 73 DAY54301.1 MAG TPA: restriction alleviation protein [Caudoviricetes sp.] diamond 93 52.8 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
26769043 26769043 PRJNA797655_S_NODE_222941_length_169_cov_1.142857_g222336_i0 PRJNA797655 222941 169 1.142857 1.93142833 Caudoviricetes sp. 2832643 Viruses Viruses 54.7 7.18e-8   NR DAF01820.1 2832643 g222336 i0 96 0.443786982248521 25 1 44.4 0 167 93 72 96 DAF01820.1 MAG TPA: Nuclease [Caudoviricetes sp.] diamond 75 54.7 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
26895941 26895941 PRJNA797655_S_NODE_58181_length_299_cov_3.187500_g57576_i0 PRJNA797655 58181 299 3.1875 9.530625 Grapevine rupestris vein feathering virus 204933 Viruses Viruses 43.5 0.0404   NR AAW33732.1 204933 g57576 i0 51.4 0.37123745819398 37 18 37.1 0 181 71 813 849 AAW33732.1 polyprotein [Grapevine rupestris vein feathering virus] diamond 111 43.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Tymoviridae Marafivirus Grapevine rupestris vein feathering virus
27401685 27401685 PRJNA797655_S_NODE_112283_length_234_cov_4.523560_g111678_i0 PRJNA797655 112283 234 4.52356 10.5851304 Caudoviricetes sp. 2832643 Viruses Viruses 96.3 4.5e-21   NR XOR78843.1 2832643 g111678 i0 59 1 78 31 98.7 1 3 233 470 547 XOR78843.1 MAG: structural phage protein [Caudoviricetes sp.] diamond 234 96.3 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
27749152 27749152 PRJNA797655_S_NODE_163944_length_197_cov_2.538961_g163339_i0 PRJNA797655 163944 197 2.538961 5.00175317 Vibrio phage vB_VpaM_R16F 2996088 Viruses Viruses 57 7.3e-8   NR UZV41147.1 2996088 g163339 i0 43.3 1.87309644670051 60 34 91.4 0 13 192 47 106 UZV41147.1 catalase-like domain protein [Vibrio phage vB_VpaM_R16F] diamond 369 57 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Vibrio phage vB_VpaM_R16F
27969860 27969860 PRJNA797655_S_NODE_131445_length_219_cov_1.636364_g130840_i0 PRJNA797655 131445 219 1.636364 3.58363716 Caudoviricetes sp. 2832643 Viruses Viruses 74.3 5.17e-15   NR DAU13458.1 2832643 g130840 i0 54.7 0.876712328767123 64 29 87.7 0 216 25 54 117 DAU13458.1 MAG TPA: Protein of unknown function (DUF3307) [Caudoviricetes sp.] diamond 192 74.3 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
28033189 28033189 PRJNA797655_S_NODE_149385_length_206_cov_2.944785_g148780_i0 PRJNA797655 149385 206 2.944785 6.0662571 Caudoviricetes sp. 2832643 Viruses Viruses 47 7.18e-4   NR DAG63432.1 2832643 g148780 i0 56.7 0.436893203883495 30 13 43.7 0 115 204 1 30 DAG63432.1 MAG TPA: Chromatin remodeling complex ATPase [Caudoviricetes sp.] diamond 90 47 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
28506701 28506701 PRJNA797655_S_NODE_63147_length_291_cov_3.189516_g62542_i0 PRJNA797655 63147 291 3.189516 9.28149156 Sporosarcina phage Lietuvens 2713145 Viruses Viruses 113 2.93e-27   NR QIG62563.1 2713145 g62542 i0 61.4 3.56701030927835 88 34 90.7 0 264 1 276 363 QIG62563.1 DNA helicase [Sporosarcina phage Lietuvens] diamond 1038 113 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Sporosarcina phage Lietuvens
28601490 28601490 PRJNA797655_S_NODE_70747_length_280_cov_2.227848_g70142_i0 PRJNA797655 70747 280 2.227848 6.2379744 Caudoviricetes sp. 2832643 Viruses Viruses 100 2.93e-22   NR DAH35354.1 2832643 g70142 i0 56.5 0.910714285714286 85 35 91.1 1 5 259 611 693 DAH35354.1 MAG TPA: bifunctional DNA-directed RNA polymerase subunit beta/beta' [Caudoviricetes sp.] diamond 255 100 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
28916905 28916905 PRJNA797655_S_NODE_408_length_1346_cov_8.435150_g274_i0 PRJNA797655 408 1346 8.43515 113.537119 Gammaretrovirus murleu 3428959 Viruses Viruses 861 7.92000000003014e-293   NR 8WUS_E 11801 g274 i0 98.6 8.59658246656761 429 6 95.6 0 1295 9 19 447 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 11571 861 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
29896071 29896071 PRJNA797655_S_NODE_153091_length_204_cov_1.788820_g152486_i0 PRJNA797655 153091 204 1.78882 3.6491928 Caudoviricetes sp. 2832643 Viruses Viruses 99.4 1.74e-22   NR DAE87731.1 2832643 g152486 i0 60.3 1 68 27 100 0 204 1 7 74 DAE87731.1 MAG TPA: endonuclease-like protein [Caudoviricetes sp.] diamond 204 99.4 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
30022463 30022463 PRJNA797655_S_NODE_179091_length_189_cov_1.643836_g178486_i0 PRJNA797655 179091 189 1.643836 3.10685004 Caudoviricetes sp. 2832643 Viruses Viruses 55.1 6.85e-7   NR DAT50906.1 2832643 g178486 i0 44.1 3.6984126984127 59 30 88.9 1 187 20 197 255 DAT50906.1 MAG TPA: hypothetical protein [Caudoviricetes sp.] diamond 699 55.1 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
30275362 30275362 PRJNA797655_S_NODE_239372_length_162_cov_1.613445_g238767_i0 PRJNA797655 239372 162 1.613445 2.6137809 Vibrio phage 1.211.A._1 1881452 Viruses Viruses 60.8 4.5e-9   NR AUR95720.1 1881452 g238767 i0 63.4 0.759259259259259 41 15 75.9 0 161 39 208 248 AUR95720.1 C-5 cytosine-specific DNA methylase [Vibrio phage 1.211.A._10N.222.52.F11] diamond 123 60.8 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Vibrio phage 1.211.A._10N.222.52.F11
30307200 30307200 PRJNA797655_S_NODE_79552_length_268_cov_2.924444_g78947_i0 PRJNA797655 79552 268 2.924444 7.83750992 Squirrel monkey retrovirus 11856 Viruses Viruses 52 2.84e-5   NR NP_041261.1 11856 g78947 i0 38.6 1.77985074626866 57 35 63.8 0 1 171 329 385 NP_041261.1 pol protein [Squirrel monkey retrovirus] diamond 477 52 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
30631552 30631552 PRJNA797655_S_NODE_34593_length_352_cov_3.478964_g33988_i0 PRJNA797655 34593 352 3.478964 12.24595328 root 1 Root_unresolved Root_unresolved 105 3.6499999999999996e-24   NR BBK09217.1 2583037 g33988 i0 54 2.55681818181818 100 46 85.2 0 302 3 107 206 BBK09217.1 ADP-ribosylation [Klebsiella phage 05F01] diamond 900 106 0.990566037735849 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Klebsiella phage 05F01
32235595 32235595 PRJNA797655_S_NODE_4578_length_647_cov_9.728477_g4114_i0 PRJNA797655 4578 647 9.728477 62.943246190000004 Moloney murine leukemia virus 11801 Viruses Viruses 418 4.3799999999999997e-132   NR NP_057933.2 11801 g4114 i0 97.2 3.97372488408037 215 6 99.7 0 1 645 1102 1316 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 2571 418 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;