RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA797655" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA797655 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26832451 26832451 PRJNA797655_S_NODE_93801_length_252_cov_2.526316_g93196_i0 PRJNA797655 93801 252 2.526316 6.36631632 Desulfobacter postgatei 2293 Bacteria Bacteria 50.8 2.1e-5   NR WP_277003893.1 2293 g93196 i0 55.3 0.904761904761905 38 17 45.2 0 114 1 46 83 WP_277003893.1 hypothetical protein [Desulfobacter postgatei] diamond 228 50.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter Desulfobacter postgatei
27148294 27148294 PRJNA797655_S_NODE_151522_length_205_cov_1.777778_g150917_i0 PRJNA797655 151522 205 1.777778 3.6444449 Desulfovibrio sp. 885 Bacteria Bacteria 42.4 0.0307   NR MDR1777398.1 885 g150917 i0 34.4 0.892682926829268 61 30 89.3 1 186 4 50 100 MDR1777398.1 chromosomal replication initiator DnaA [Desulfovibrio sp.] diamond 183 42.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
27496376 27496376 PRJNA797655_S_NODE_83923_length_263_cov_2.245455_g83318_i0 PRJNA797655 83923 263 2.245455 5.90554665 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 43.9 0.0188   NR MEW6259432.1 2202153 g83318 i0 42.9 0.479087452471483 42 24 47.9 0 30 155 147 188 MEW6259432.1 hypothetical protein [Thermodesulfobacteriota bacterium] diamond 126 43.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
27536987 27536987 PRJNA797655_S_NODE_35723_length_349_cov_1.385621_g35118_i0 PRJNA797655 35723 349 1.385621 4.83581729 Pseudomonadati 3379134 Bacteria Bacteria 67 3.8e-10   NR WP_304045878.1 901 g35118 i0 43.6 2.73352435530086 78 43 66.2 1 79 309 431 508 WP_304045878.1 ATPase, T2SS/T4P/T4SS family [Desulfovibrio piger] diamond 954 67 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio piger
30654094 30654094 PRJNA797655_S_NODE_126193_length_223_cov_1.600000_g125588_i0 PRJNA797655 126193 223 1.6 3.568 Geobacteraceae bacterium 2282154 Bacteria Bacteria 42.4 0.0389   NR HTG81980.1 2282154 g125588 i0 35.7 0.753363228699552 56 36 75.3 0 20 187 144 199 HTG81980.1 aminopeptidase [Geobacteraceae bacterium] diamond 168 42.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae   Geobacteraceae bacterium
32835031 32835031 PRJNA797655_S_NODE_141400_length_212_cov_1.183432_g140795_i0 PRJNA797655 141400 212 1.183432 2.50887584 Syntrophales bacterium 2928017 Bacteria Bacteria 41.6 0.0297   NR HOI75650.1 2928017 g140795 i0 48.9 0.636792452830189 45 20 63.7 1 12 146 49 90 HOI75650.1 hypothetical protein [Syntrophales bacterium] diamond 135 41.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales     Syntrophales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;