RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA797655" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA797655 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27053992 27053992 PRJNA797655_S_NODE_164302_length_197_cov_1.974026_g163697_i0 PRJNA797655 164302 197 1.974026 3.88883122 Globomyces pollinis-pini 382532 Fungi Fungi 43.9 0.00633   NR KAI8897266.1 382532 g163697 i0 39.5 0.654822335025381 43 26 65.5 0 182 54 112 154 KAI8897266.1 hypothetical protein BC833DRAFT_565961 [Globomyces pollinis-pini] diamond 129 43.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Globomycetaceae Globomyces Globomyces pollinis-pini
31697403 31697403 PRJNA797655_S_NODE_200757_length_178_cov_2.488889_g200152_i0 PRJNA797655 200757 178 2.488889 4.43022242 Piromyces sp. E2 73868 Fungi Fungi 41.6 0.023   NR OUM57816.1 73868 g200152 i0 37.9 0.97752808988764 58 30 92.7 2 1 165 52 106 OUM57816.1 hypothetical protein PIROE2DRAFT_64787 [Piromyces sp. E2] diamond 174 41.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp. E2
32520277 32520277 PRJNA797655_S_NODE_178119_length_189_cov_3.945205_g177514_i0 PRJNA797655 178119 189 3.945205 7.45643745 Hyaloraphidium curvatum 82268 Fungi Fungi 42.4 0.0257   NR KAI9006496.1 82268 g177514 i0 32.1 0.888888888888889 56 36 85.7 1 183 22 78 133 KAI9006496.1 hypothetical protein DFJ74DRAFT_392999 [Hyaloraphidium curvatum] diamond 168 42.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;