RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA797655" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA797655 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28916905 28916905 PRJNA797655_S_NODE_408_length_1346_cov_8.435150_g274_i0 PRJNA797655 408 1346 8.43515 113.537119 Gammaretrovirus murleu 3428959 Viruses Viruses 861 7.92000000003014e-293   NR 8WUS_E 11801 g274 i0 98.6 8.59658246656761 429 6 95.6 0 1295 9 19 447 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 11571 861 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30307200 30307200 PRJNA797655_S_NODE_79552_length_268_cov_2.924444_g78947_i0 PRJNA797655 79552 268 2.924444 7.83750992 Squirrel monkey retrovirus 11856 Viruses Viruses 52 2.84e-5   NR NP_041261.1 11856 g78947 i0 38.6 1.77985074626866 57 35 63.8 0 1 171 329 385 NP_041261.1 pol protein [Squirrel monkey retrovirus] diamond 477 52 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
32235595 32235595 PRJNA797655_S_NODE_4578_length_647_cov_9.728477_g4114_i0 PRJNA797655 4578 647 9.728477 62.943246190000004 Moloney murine leukemia virus 11801 Viruses Viruses 418 4.3799999999999997e-132   NR NP_057933.2 11801 g4114 i0 97.2 3.97372488408037 215 6 99.7 0 1 645 1102 1316 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 2571 418 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;