RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA797655" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA797655 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27085600 27085600 PRJNA797655_S_NODE_84522_length_262_cov_3.123288_g83917_i0 PRJNA797655 84522 262 3.123288 8.18301456 Fusobacterium necrophorum 859 Bacteria Bacteria 52 1.11e-6   NR WP_222702847.1 859 g83917 i0 53.6 0.641221374045801 56 25 64.1 1 186 19 1 55 WP_222702847.1 hypothetical protein, partial [Fusobacterium necrophorum] diamond 168 52 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
27654341 27654341 PRJNA797655_S_NODE_173204_length_192_cov_1.932886_g172599_i0 PRJNA797655 173204 192 1.932886 3.71114112 Fusobacteriaceae bacterium 2053555 Bacteria Bacteria 109 4.69e-26   NR MBP9597380.1 2053555 g172599 i0 100 0.890625 57 0 89.1 0 173 3 1 57 MBP9597380.1 DUF1430 domain-containing protein [Fusobacteriaceae bacterium] diamond 171 109 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium
28475132 28475132 PRJNA797655_S_NODE_185946_length_185_cov_3.366197_g185341_i0 PRJNA797655 185946 185 3.366197 6.22746445 Fusobacterium necrophorum 859 Bacteria Bacteria 51.6 1.33e-6   NR WP_187105693.1 859 g185341 i0 47.2 0.859459459459459 53 28 85.9 0 26 184 4 56 WP_187105693.1 RBD-like domain-containing protein, partial [Fusobacterium necrophorum] diamond 159 51.6 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
29453551 29453551 PRJNA797655_S_NODE_182110_length_187_cov_3.000000_g181505_i0 PRJNA797655 182110 187 3 5.61 Fusobacterium necrophorum 859 Bacteria Bacteria 40.4 0.0288   NR WP_147369713.1 859 g181505 i0 54.8 0.994652406417112 31 14 49.7 0 3 95 48 78 WP_147369713.1 reverse transcriptase domain-containing protein, partial [Fusobacterium necrophorum] diamond 186 40.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;