RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA797655" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA797655 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26832445 26832445 PRJNA797655_S_NODE_226441_length_167_cov_1.935484_g225836_i0 PRJNA797655 226441 167 1.935484 3.23225828 Methanobrevibacter sp. 66852 Archaea Archaea 108 3.1e-28   NR MEE0925270.1 66852 g225836 i0 98.2 0.988023952095808 55 1 98.8 0 167 3 64 118 MEE0925270.1 class I SAM-dependent methyltransferase [Methanobrevibacter sp.] diamond 165 108 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29043588 29043588 PRJNA797655_S_NODE_196888_length_180_cov_1.751825_g196283_i0 PRJNA797655 196888 180 1.751825 3.153285 Methanobrevibacter smithii 2173 Archaea Archaea 43.5 0.00714   NR WP_217423167.1 2173 g196283 i0 52 0.833333333333333 50 22 80 1 144 1 122 171 WP_217423167.1 hypothetical protein, partial [Methanobrevibacter smithii] diamond 150 43.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
32140391 32140391 PRJNA797655_S_NODE_198378_length_179_cov_2.882353_g197773_i0 PRJNA797655 198378 179 2.882353 5.15941187 Methanobrevibacter smithii 2173 Archaea Archaea 54.7 4.97e-7   NR WP_217423167.1 2173 g197773 i0 64.3 0.70391061452514 42 15 70.4 0 178 53 130 171 WP_217423167.1 hypothetical protein, partial [Methanobrevibacter smithii] diamond 126 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;