RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA797475" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA797475 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28547567 28547567 PRJNA797475_P_NODE_4647_length_463_cov_2.069231_g4549_i0 PRJNA797475 4647 463 2.069231 9.58053953 Bacteria 2 Bacteria Bacteria 45.4 0.0192   NR PLY05436.1 892 g4549 i0 44.7 1.21814254859611 47 26 30.5 0 356 216 33 79 PLY05436.1 MAG: NAD(P)H-dependent oxidoreductase [Desulfuromonas sp.] diamond 564 45.8 0.991266375545852 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp.
29516875 29516875 PRJNA797475_P_NODE_22390_length_250_cov_0.870056_g22291_i0 PRJNA797475 22390 250 0.870056 2.17514 Candidatus Dadabacteria bacterium RIFCSPHIGHO2_12_FULL_53_21 1797756 Bacteria Bacteria 163 5.92e-47   NR OGE22838.1 1797756 g22291 i0 96.4 0.996 83 3 99.6 0 249 1 248 330 OGE22838.1 MAG: 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Candidatus Dadabacteria bacterium RIFCSPHIGHO2_12_FULL_53_21] diamond 249 163 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium RIFCSPHIGHO2_12_FULL_53_21
31412750 31412750 PRJNA797475_P_NODE_27796_length_244_cov_0.900585_g27697_i0 PRJNA797475 27796 244 0.900585 2.1974274 Desulfobacterales bacterium 2044940 Bacteria Bacteria 80.9 9.05e-16   NR MDJ0818684.1 2044940 g27697 i0 52.5 0.983606557377049 80 36 98.4 1 242 3 268 345 MDJ0818684.1 alanine racemase [Desulfobacterales bacterium] diamond 240 80.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
32740778 32740778 PRJNA797475_P_NODE_24960_length_247_cov_0.885057_g24861_i0 PRJNA797475 24960 247 0.885057 2.18609079 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 42.7 0.0391   NR MFC1834884.1 2202153 g24861 i0 63.6 0.40080971659919 33 12 40.1 0 99 1 497 529 MFC1834884.1 hypothetical protein [Thermodesulfobacteriota bacterium] diamond 99 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;