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contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA797475" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA797475 · 19 ✖

analysis 1

  • diamond · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12260903 12260903 PRJNA797475_P_NODE_23430_length_249_cov_0.875000_g23331_i0 PRJNA797475 23430 249 0.875 2.17875 Chordata 7711 Chordata Chordata 97.8 1.7400000000000003e-21   NR KAG8141766.1 35670 g23331 i0 57.5 86.8915662650602 80 28 96.4 1 249 10 235 308 KAG8141766.1 hypothetical protein E2320_006450 [Naja naja] diamond 21636 97.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Naja Naja naja
16084001 16084001 PRJNA797475_P_NODE_25933_length_246_cov_0.890173_g25834_i0 PRJNA797475 25933 246 0.890173 2.18982558 Cricetulus griseus 10029 Chordata Chordata 108 7.2e-29   NR ERE68096.1 10029 g25834 i0 78.5 0.792682926829268 65 14 79.3 0 203 9 1 65 ERE68096.1 hypothetical protein H671_7g18186 [Cricetulus griseus] diamond 195 108 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
22458439 22458439 PRJNA797475_P_NODE_12698_length_300_cov_1.356828_g12599_i0 PRJNA797475 12698 300 1.356828 4.070484 Scyliorhinus torazame 75743 Chordata Chordata 139 3.5300000000000004e-36   NR GCB73862.1 75743 g12599 i0 71.9 68.13 89 25 89 0 33 299 393 481 GCB73862.1 hypothetical protein [Scyliorhinus torazame] diamond 20439 140 0.992857142857143 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus torazame
23734329 23734329 PRJNA797475_P_NODE_4639_length_464_cov_1.163683_g4541_i0 PRJNA797475 4639 464 1.163683 5.39948912 Metazoa 33208 Chordata Chordata 222 3.18e-69   NR XP_039263546.1 7725 g4541 i0 66.7 16.0668103448276 156 50 99.6 1 463 2 169 324 XP_039263546.1 cathepsin B-like [Styela clava] diamond 7455 223 0.995515695067265 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
27180072 27180072 PRJNA797475_P_NODE_12862_length_298_cov_2.324444_g12763_i0 PRJNA797475 12862 298 2.324444 6.92684312 Branchiostoma belcheri 7741 Chordata Chordata 76.3 4.37e-16   NR XP_019633956.1 7741 g12763 i0 75 5.96979865771812 52 13 52.3 0 287 132 1 52 XP_019633956.1 PREDICTED: 60S ribosomal protein L29-like [Branchiostoma belcheri] diamond 1779 76.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
27401684 27401684 PRJNA797475_P_NODE_9523_length_338_cov_1.694340_g9424_i0 PRJNA797475 9523 338 1.69434 5.7268692 Spea bombifrons 233779 Chordata Chordata 70.1 1.14e-11   NR XP_053322712.1 233779 g9424 i0 38.7 1.51775147928994 106 62 94.1 2 320 3 86 188 XP_053322712.1 carbonic anhydrase 3-like [Spea bombifrons] diamond 513 70.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Spea Spea bombifrons
28475119 28475119 PRJNA797475_P_NODE_24626_length_248_cov_0.874286_g24527_i0 PRJNA797475 24626 248 0.874286 2.16822928 Marmota monax 9995 Chordata Chordata 90.9 1.83e-19   NR KAF7462032.1 9995 g24527 i0 56.3 5.15322580645161 71 31 85.9 0 20 232 209 279 KAF7462032.1 hypothetical protein GHT09_013259 [Marmota monax] diamond 1278 90.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota monax
28831390 28831390 PRJNA797475_P_NODE_24588_length_248_cov_0.880000_g24489_i0 PRJNA797475 24588 248 0.88 2.1824 Metazoa 33208 Chordata Chordata 97.4 4.76e-24   NR NXL98530.1 137541 g24489 i0 66.7 19.2822580645161 81 27 98 0 245 3 26 106 NXL98530.1 EF1D factor [Tyrannus savana] diamond 4782 97.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Tyrannidae Tyrannus Tyrannus savana
29264228 29264228 PRJNA797475_P_NODE_12349_length_304_cov_1.099567_g12250_i0 PRJNA797475 12349 304 1.099567 3.34268368 Myotis brandtii 109478 Chordata Chordata 66.6 4.71e-11   NR EPQ04490.1 109478 g12250 i0 60.8 0.503289473684211 51 20 50.3 0 138 290 88 138 EPQ04490.1 DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Myotis brandtii] diamond 153 66.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis brandtii
30347879 30347879 PRJNA797475_P_NODE_7912_length_365_cov_1.482877_g7813_i0 PRJNA797475 7912 365 1.482877 5.41250105 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 42.7 0.0331   NR CAB3267733.1 59560 g7813 i0 30.5 1.44657534246575 95 58 75.6 3 287 12 12 101 CAB3267733.1 protein Asterix [Phallusia mammillata] diamond 528 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
30599992 30599992 PRJNA797475_P_NODE_28453_length_243_cov_0.905882_g28354_i0 PRJNA797475 28453 243 0.905882 2.20129326 Metazoa 33208 Chordata Chordata 129 3.5699999999999995e-35   NR XP_019394314.1 8502 g28354 i0 78 80 82 15 100 2 243 1 59 138 XP_019394314.1 PREDICTED: vacuolar protein sorting-associated protein 29 isoform X2 [Crocodylus porosus] diamond 19440 130 0.992307692307692 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Crocodylidae Crocodylus Crocodylus porosus
30726421 30726421 PRJNA797475_P_NODE_11394_length_314_cov_1.278008_g11295_i0 PRJNA797475 11394 314 1.278008 4.01294512 Opisthokonta 33154 Chordata Chordata 60.1 2.98e-9   NR XP_027242255.1 10029 g11295 i0 70.2 3.09554140127389 47 14 44.9 0 314 174 7 53 XP_027242255.1 40S ribosomal protein S6-like isoform X1, partial [Cricetulus griseus] diamond 972 60.5 0.993388429752066 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
30970297 30970297 PRJNA797475_P_NODE_10114_length_330_cov_1.494163_g10015_i0 PRJNA797475 10114 330 1.494163 4.9307379 Xenopus tropicalis 8364 Chordata Chordata 51.6 6.02e-6   NR NP_001291715.2 8364 g10015 i0 40.8 1.9 71 40 62.7 2 46 252 13 83 NP_001291715.2 selenoprotein W1 [Xenopus tropicalis] diamond 627 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
31539365 31539365 PRJNA797475_P_NODE_19396_length_261_cov_1.393617_g19297_i0 PRJNA797475 19396 261 1.393617 3.63734037 Mus musculus 10090 Chordata Chordata 93.2 1.56e-20   NR BAB30146.1 10090 g19297 i0 73.1 1.19540229885057 52 14 59.8 0 3 158 24 75 BAB30146.1 unnamed protein product [Mus musculus] diamond 312 93.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
32045482 32045482 PRJNA797475_P_NODE_15278_length_282_cov_1.425837_g15179_i0 PRJNA797475 15278 282 1.425837 4.02086034 Zootoca vivipara 8524 Chordata Chordata 79.7 1.4e-15   NR XP_034973091.1 8524 g15179 i0 43.5 0.904255319148936 85 47 89.4 1 16 267 175 259 XP_034973091.1 C-signal [Zootoca vivipara] diamond 255 79.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Zootoca Zootoca vivipara
32203624 32203624 PRJNA797475_P_NODE_25578_length_246_cov_1.670520_g25479_i0 PRJNA797475 25578 246 1.67052 4.1094792 Branchiostoma belcheri 7741 Chordata Chordata 72.8 1.02e-12   NR XP_019641984.1 7741 g25479 i0 44.6 0.902439024390244 74 41 90.2 0 222 1 35 108 XP_019641984.1 PREDICTED: tripeptidyl-peptidase 1-like [Branchiostoma belcheri] diamond 222 72.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
32497644 32497644 PRJNA797475_P_NODE_12759_length_299_cov_2.668142_g12660_i0 PRJNA797475 12759 299 2.668142 7.97774458 Metazoa 33208 Chordata Chordata 95.9 3.2000000000000003e-22   NR XP_067969602.1 7769 g12660 i0 56.7 30.0602006688963 90 36 87.3 1 35 295 1 90 XP_067969602.1 transmembrane emp24 domain-containing protein 2 isoform X2 [Myxine glutinosa] diamond 8988 95.9 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
32654915 32654915 PRJNA797475_P_NODE_20400_length_255_cov_2.346154_g20301_i0 PRJNA797475 20400 255 2.346154 5.9826927 Opisthokonta 33154 Chordata Chordata 82 9.93e-18   NR XP_035667477.1 7739 g20301 i0 67.7 7.92941176470588 62 20 72.9 0 3 188 57 118 XP_035667477.1 40S ribosomal protein S17 [Branchiostoma floridae] diamond 2022 82.8 0.990338164251208 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32835024 32835024 PRJNA797475_P_NODE_30240_length_241_cov_0.916667_g30141_i0 PRJNA797475 30240 241 0.916667 2.20916747 Peromyscus leucopus 10041 Chordata Chordata 57.4 2.21e-7   NR XP_028747518.1 10041 g30141 i0 43.4 3.59751037344398 76 40 93.4 3 227 3 205 278 XP_028747518.1 procathepsin L [Peromyscus leucopus] diamond 867 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Peromyscus Peromyscus leucopus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;