RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA797475" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA797475 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2057284 2057284 PRJNA797475_P_NODE_24202_length_248_cov_0.880000_g24103_i0 PRJNA797475 24202 248 0.88 2.1824 Pseudomonadati 3379134 Bacteria Bacteria 76.3 5.92e-14   NR HRF57438.1 2268180 g24103 i0 62.3 4.4758064516129 61 22 73.8 1 248 66 405 464 HRF57438.1 5-histidylcysteine sulfoxide synthase [Campylobacterales bacterium] diamond 1110 76.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales     Campylobacterales bacterium
28222317 28222317 PRJNA797475_P_NODE_20646_length_254_cov_1.701657_g20547_i0 PRJNA797475 20646 254 1.701657 4.32220878 Helicobacter pylori 210 Bacteria Bacteria 142 2.2699999999999998e-42   NR GAA8683247.1 210 g20547 i0 96.3 0.968503937007874 82 3 96.9 0 247 2 1 82 GAA8683247.1 hypothetical protein Kyoto145A_0510 [Helicobacter pylori] diamond 246 142 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31412748 31412748 PRJNA797475_P_NODE_22656_length_250_cov_0.870056_g22557_i0 PRJNA797475 22656 250 0.870056 2.17514 uncultured Campylobacter sp. 218934 Bacteria Bacteria 158 4.44e-44   NR WP_298786630.1 218934 g22557 i0 100 0.996 83 0 99.6 0 2 250 225 307 WP_298786630.1 beta-ketoacyl synthase N-terminal-like domain-containing protein [uncultured Campylobacter sp.] diamond 249 158 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter uncultured Campylobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;