RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA797475" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA797475 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5045106 5045106 PRJNA797475_P_NODE_30804_length_234_cov_2.850932_g30705_i0 PRJNA797475 30804 234 2.850932 6.67118088 Deinococcus taklimakanensis 536443 Bacteria Bacteria 152 4.499999999999999e-43   NR WP_386843601.1 536443 g30705 i0 100 0.987179487179487 77 0 98.7 0 232 2 224 300 WP_386843601.1 sensor histidine kinase [Deinococcus taklimakanensis] diamond 231 152 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus taklimakanensis
12696570 12696570 PRJNA797475_P_NODE_21050_length_252_cov_1.569832_g20951_i0 PRJNA797475 21050 252 1.569832 3.95597664 Deinococcus 1298 Bacteria Bacteria 147 1.83e-39   NR WP_184116137.1 1141878 g20951 i0 85.2 2.91666666666667 81 12 96.4 0 248 6 382 462 WP_184116137.1 putative bifunctional diguanylate cyclase/phosphodiesterase [Deinococcus metalli] diamond 735 147 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus metalli
27969857 27969857 PRJNA797475_P_NODE_28025_length_244_cov_0.900585_g27926_i0 PRJNA797475 28025 244 0.900585 2.1974274 Thermus brevis 2862456 Bacteria Bacteria 142 3.77e-39   NR WP_246584253.1 2862456 g27926 i0 100 0.848360655737705 69 0 84.8 0 2 208 265 333 WP_246584253.1 type I-B CRISPR-associated protein Cas7/Csh2 [Thermus brevis] diamond 207 142 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus brevis
32108654 32108654 PRJNA797475_P_NODE_24838_length_247_cov_0.885057_g24739_i0 PRJNA797475 24838 247 0.885057 2.18609079 Synergistaceae bacterium 2053624 Bacteria Bacteria 59.3 1.56e-8   NR MDR2137471.1 2053624 g24739 i0 54.5 0.668016194331984 55 17 57.1 2 89 229 23 77 MDR2137471.1 TerD family protein [Synergistaceae bacterium] diamond 165 59.3 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;