RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA796975" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA796975 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27116884 27116884 PRJNA796975_S_NODE_4702_length_214_cov_1.236364_g4625_i0 PRJNA796975 4702 214 1.236364 2.64581896 Trypanosoma brucei brucei TREU927 185431 Euglenozoa other_Eukaryota 42.4 0.00312   NR XP_803775.1 185431 g4625 i0 100 0.238317757009346 17 0 23.8 0 102 152 1 17 XP_803775.1 hypothetical protein, unlikely [Trypanosoma brucei brucei TREU927] diamond 51 42.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
30527771 30527771 PRJNA796975_S_NODE_3213_length_245_cov_2.433673_g3136_i0 PRJNA796975 3213 245 2.433673 5.96249885 Trypanosoma brucei equiperdum 630700 Euglenozoa other_Eukaryota 137 7.179999999999999e-40   NR RHW67217.1 630700 g3136 i0 100 0.881632653061225 72 0 88.2 0 216 1 1 72 RHW67217.1 Ribosomal protein S10p/S20e [Trypanosoma brucei equiperdum] diamond 216 137 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
32677417 32677417 PRJNA796975_S_NODE_10840_length_166_cov_0.871795_g10763_i0 PRJNA796975 10840 166 0.871795 1.4471797 Trypanosoma conorhini 83891 Euglenozoa other_Eukaryota 70.5 2.06e-12   NR XP_029227689.1 83891 g10763 i0 68.5 2.92771084337349 54 17 97.6 0 164 3 216 269 XP_029227689.1 mitochondrial processing peptidase alpha subunit [Trypanosoma conorhini] diamond 486 70.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;