RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA796753" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA796753 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27338442 27338442 PRJNA796753_P_NODE_32743_length_271_cov_1.449495_g32431_i0 PRJNA796753 32743 271 1.449495 3.92813145 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 53.5 3.91e-6   NR XP_001318893.1 412133 g32431 i0 57.1 3 49 21 54.2 0 240 94 2 50 XP_001318893.1 small Rab GTPase RabD2 [Trichomonas vaginalis G3] diamond 813 53.5 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27559217 27559217 PRJNA796753_P_NODE_44504_length_248_cov_0.880000_g44192_i0 PRJNA796753 44504 248 0.88 2.1824 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 68.6 2.41e-11   NR XP_067777913.1 135588 g44192 i0 39.8 2.43145161290323 93 35 87.1 1 217 2 107 199 XP_067777913.1 CMGC family protein kinase [Histomonas meleagridis] diamond 603 68.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27654317 27654317 PRJNA796753_P_NODE_51284_length_243_cov_0.905882_g50972_i0 PRJNA796753 51284 243 0.905882 2.20129326 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 60.1 2.88e-8   NR XP_068367893.1 1144522 g50972 i0 34.6 0.962962962962963 78 51 96.3 0 241 8 425 502 XP_068367893.1 uncharacterized protein TRFO_03032 [Tritrichomonas foetus] diamond 234 60.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30433395 30433395 PRJNA796753_P_NODE_50313_length_244_cov_0.900585_g50001_i0 PRJNA796753 50313 244 0.900585 2.1974274 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 47 0.00121   NR XP_001325845.1 412133 g50001 i0 38.4 1.05737704918033 86 47 98.4 2 5 244 303 388 XP_001325845.1 M28 Nicastrin domain-containing protein [Trichomonas vaginalis G3] diamond 258 47 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;