RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA796753" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA796753 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13534323 13534323 PRJNA796753_P_NODE_25731_length_296_cov_1.381166_g25419_i0 PRJNA796753 25731 296 1.381166 4.08825136 Pseudomonadati 3379134 Bacteria Bacteria 161 1.12e-44   NR WP_012500155.1 100716 g25419 i0 81.6 17.8783783783784 98 18 99.3 0 294 1 120 217 WP_012500155.1 glucose-6-phosphate isomerase [Chloroherpeton thalassium] diamond 5292 162 0.993827160493827 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae Chloroherpeton Chloroherpeton thalassium
29485142 29485142 PRJNA796753_P_NODE_31230_length_276_cov_1.137931_g30918_i0 PRJNA796753 31230 276 1.137931 3.14068956 Chlorobiales bacterium 2723030 Bacteria Bacteria 135 7.97e-36   NR NTW50719.1 2723030 g30918 i0 69.2 2.96739130434783 91 28 98.9 0 275 3 99 189 NTW50719.1 acetyl-CoA hydrolase/transferase family protein [Chlorobiales bacterium] diamond 819 135 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales     Chlorobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;