RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA796639" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA796639 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27695082 27695082 PRJNA796639_P_NODE_4944_length_265_cov_2.005208_g4819_i0 PRJNA796639 4944 265 2.005208 5.3138012 Tritrichomonas 5723 Parabasalia other_Eukaryota 104 6.3e-25   NR XP_068367264.1 1144522 g4819 i0 58.4 1.74339622641509 77 32 87.2 0 233 3 8 84 XP_068367264.1 pyridoxal kinase family protein [Tritrichomonas foetus] diamond 462 104 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28411963 28411963 PRJNA796639_P_NODE_6686_length_246_cov_0.890173_g6561_i0 PRJNA796639 6686 246 0.890173 2.18982558 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 47.4 8.69e-4   NR XP_001316520.1 412133 g6561 i0 37.7 0.841463414634146 69 41 84.1 1 226 20 9 75 XP_001316520.1 hypothetical protein TVAGG3_0826290 [Trichomonas vaginalis G3] diamond 207 47.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29611369 29611369 PRJNA796639_P_NODE_7030_length_245_cov_0.889535_g6905_i0 PRJNA796639 7030 245 0.889535 2.17936075 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 117 4.119999999999999e-31   NR XP_067772269.1 135588 g6905 i0 72.5 1.95918367346939 80 22 98 0 1 240 106 185 XP_067772269.1 COMM domain-containing protein 9 [Histomonas meleagridis] diamond 480 117 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
32803467 32803467 PRJNA796639_P_NODE_2340_length_366_cov_0.935154_g2215_i0 PRJNA796639 2340 366 0.935154 3.42266364 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 124 8.95e-34   NR XP_068369390.1 1144522 g2215 i0 49.6 0.942622950819672 115 58 94.3 0 9 353 6 120 XP_068369390.1 Profilin A [Tritrichomonas foetus] diamond 345 124 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;