RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA796639" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA796639 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29399760 29399760 PRJNA796639_P_NODE_2729_length_341_cov_0.940299_g2604_i0 PRJNA796639 2729 341 0.940299 3.20641959 Sphingobacterium 28453 Bacteria Bacteria 44.7 0.0221   NR WP_038699358.1 976 g2604 i0 39 1.03812316715543 59 36 51.9 0 136 312 20 78 WP_038699358.1 MULTISPECIES: Na+/H+ antiporter NhaA [Bacteroidota] diamond 354 44.7 1 Bacteria FCB group Pseudomonadati Bacteroidota          
29516815 29516815 PRJNA796639_P_NODE_6710_length_246_cov_0.890173_g6585_i0 PRJNA796639 6710 246 0.890173 2.18982558 Flavobacteriaceae bacterium 1871037 Bacteria Bacteria 130 1.93e-35   NR MDR2204690.1 1871037 g6585 i0 72.2 0.963414634146341 79 22 96.3 0 238 2 104 182 MDR2204690.1 hypothetical protein [Flavobacteriaceae bacterium] diamond 237 130 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae   Flavobacteriaceae bacterium
30527721 30527721 PRJNA796639_P_NODE_6733_length_246_cov_0.890173_g6608_i0 PRJNA796639 6733 246 0.890173 2.18982558 Chitinophagales bacterium 2448779 Bacteria Bacteria 42.7 0.0384   NR MCS6934666.1 2448779 g6608 i0 32.6 1.04878048780488 86 45 89 2 231 13 4 89 MCS6934666.1 ABC transporter ATP-binding protein [Chitinophagales bacterium] diamond 258 42.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales     Chitinophagales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;