RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA796639" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA796639 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27085518 27085518 PRJNA796639_P_NODE_6402_length_247_cov_1.724138_g6277_i0 PRJNA796639 6402 247 1.724138 4.25862086 Clostridia bacterium 2044939 Bacteria Bacteria 85.9 8.3e-18   NR HML69499.1 2044939 g6277 i0 51.9 0.983805668016194 81 38 98.4 1 5 247 53 132 HML69499.1 nucleoside hydrolase [Clostridia bacterium] diamond 243 85.9 1 Bacteria   Bacillati Bacillota Clostridia       Clostridia bacterium
28222259 28222259 PRJNA796639_P_NODE_7306_length_243_cov_0.905882_g7181_i0 PRJNA796639 7306 243 0.905882 2.20129326 Clostridium sp. 1506 Bacteria Bacteria 41.6 0.0371   NR MDR0964144.1 1506 g7181 i0 44.4 0.333333333333333 27 15 33.3 0 53 133 4 30 MDR0964144.1 hypothetical protein [Clostridium sp.] diamond 81 41.6 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp.
31855413 31855413 PRJNA796639_P_NODE_5517_length_251_cov_0.865169_g5392_i0 PRJNA796639 5517 251 0.865169 2.17157419 Oscillospiraceae bacterium 2485925 Bacteria Bacteria 159 1.97e-43   NR MBQ3252338.1 2485925 g5392 i0 94 6.94422310756972 83 5 99.2 0 2 250 131 213 MBQ3252338.1 glutamine synthetase III [Oscillospiraceae bacterium] diamond 1743 159 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;