RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA796639" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA796639 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2492047 2492047 PRJNA796639_P_NODE_7902_length_233_cov_2.350000_g7777_i0 PRJNA796639 7902 233 2.35 5.4755 Paramecium octaurelia 43137 SAR_Eukaryotes SAR_Eukaryotes 129 2.61e-35   NR CAD8205459.1 43137 g7777 i0 74 0.991416309012876 77 20 99.1 0 232 2 78 154 CAD8205459.1 unnamed protein product [Paramecium octaurelia] diamond 231 129 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium octaurelia
27022246 27022246 PRJNA796639_P_NODE_3962_length_287_cov_1.289720_g3837_i0 PRJNA796639 3962 287 1.28972 3.7014964 Polarella glacialis 89957 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0245   NR CAK0841813.1 89957 g3837 i0 38.8 0.700348432055749 67 34 63.8 2 207 25 569 634 CAK0841813.1 unnamed protein product [Polarella glacialis] diamond 201 43.9 1 Eukaryota Sar     Dinophyceae Suessiales Suessiaceae Polarella Polarella glacialis
29021243 29021243 PRJNA796639_P_NODE_5868_length_250_cov_0.870056_g5743_i0 PRJNA796639 5868 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 170 8.4e-51   NR CAD8081379.1 5886 g5743 i0 96.4 410.256 83 3 99.6 0 2 250 42 124 CAD8081379.1 unnamed protein product [Paramecium primaurelia] diamond 102564 171 0.994152046783626 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;