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contig_metadata

35 rows where analysis = "diamond", bioproject = "PRJNA795983" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 35 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA795983 · 35 ✖

analysis 1

  • diamond · 35 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14808521 14808521 PRJNA795983_S_NODE_10792_length_378_cov_2.298361_g10667_i0 PRJNA795983 10792 378 2.298361 8.68780458 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 132 1.17e-36   NR MBM3751753.1 2080302 g10667 i0 61.4 1.73809523809524 114 43 90.5 1 350 9 15 127 MBM3751753.1 fasciclin domain-containing protein [Acidimicrobiia bacterium] diamond 657 132 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
26800592 26800592 PRJNA795983_S_NODE_9841_length_391_cov_0.849057_g9716_i0 PRJNA795983 9841 391 0.849057 3.31981287 Jatrophihabitans sp. 1932789 Bacteria Bacteria 51.2 1.78e-4   NR HEX4726839.1 1932789 g9716 i0 33.3 0.529411764705882 69 44 51.4 1 383 183 230 298 HEX4726839.1 carboxymuconolactone decarboxylase family protein [Jatrophihabitans sp.] diamond 207 51.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Jatrophihabitantales Jatrophihabitantaceae Jatrophihabitans Jatrophihabitans sp.
27695074 27695074 PRJNA795983_S_NODE_25244_length_284_cov_1.459716_g25119_i0 PRJNA795983 25244 284 1.459716 4.14559344 Bacillati 1783272 Bacteria Bacteria 64.7 8.06e-10   NR HYO33696.1 1871072 g25119 i0 38.6 2.83098591549296 88 54 93 0 264 1 87 174 HYO33696.1 rhomboid family intramembrane serine protease [Nocardioidaceae bacterium] diamond 804 64.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae   Nocardioidaceae bacterium
27758264 27758264 PRJNA795983_S_NODE_16424_length_328_cov_1.086275_g16299_i0 PRJNA795983 16424 328 1.086275 3.562982 Streptomyces 1883 Bacteria Bacteria 160 9.05e-46   NR HET9379689.1 1931 g16299 i0 68.5 13.8292682926829 108 31 98.8 2 326 3 219 323 HET9379689.1 zinc metalloprotease [Streptomyces sp.] diamond 4536 161 0.993788819875776 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp.
27852577 27852577 PRJNA795983_S_NODE_12284_length_361_cov_1.548611_g12159_i0 PRJNA795983 12284 361 1.548611 5.59048571 root 1 Root_unresolved Root_unresolved 62 2.53e-8   NR WP_404389340.1 412689 g12159 i0 36.4 4.18836565096953 107 57 88.9 2 32 352 61 156 WP_404389340.1 vWA domain-containing protein [Humibacillus xanthopallidus] diamond 1512 62 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Humibacillus Humibacillus xanthopallidus
28064518 28064518 PRJNA795983_S_NODE_40705_length_244_cov_0.900585_g40580_i0 PRJNA795983 40705 244 0.900585 2.1974274 Actinomycetota bacterium 2900548 Bacteria Bacteria 126 4.37e-36   NR MBS1889968.1 2900548 g40580 i0 100 0.774590163934426 63 0 77.5 0 222 34 1 63 MBS1889968.1 hypothetical protein [Actinomycetota bacterium] diamond 189 126 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28285309 28285309 PRJNA795983_S_NODE_14326_length_343_cov_1.133333_g14201_i0 PRJNA795983 14326 343 1.133333 3.88733219 Bifidobacterium polysaccharolyticum 2750967 Bacteria Bacteria 57 1.19e-6   NR WP_261252216.1 2750967 g14201 i0 37.1 0.918367346938776 105 61 90.1 4 15 323 884 985 WP_261252216.1 InlB B-repeat-containing protein [Bifidobacterium polysaccharolyticum] diamond 315 57 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium polysaccharolyticum
28790595 28790595 PRJNA795983_S_NODE_28627_length_272_cov_1.592965_g28502_i0 PRJNA795983 28627 272 1.592965 4.3328648 Miltoncostaeaceae bacterium 2952967 Bacteria Bacteria 50.4 1.01e-4   NR MDX6555402.1 2952967 g28502 i0 43.9 1.25735294117647 57 31 61.8 1 172 5 100 156 MDX6555402.1 hypothetical protein [Miltoncostaeaceae bacterium] diamond 342 50.4 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Miltoncostaeales Miltoncostaeaceae   Miltoncostaeaceae bacterium
28948846 28948846 PRJNA795983_S_NODE_27268_length_277_cov_0.833333_g27143_i0 PRJNA795983 27268 277 0.833333 2.30833241 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 43.1 0.0395   NR MEZ5206484.1 2201156 g27143 i0 42.2 0.89891696750902494 83 40 87.7 4 6 248 469 545 MEZ5206484.1 molybdopterin-dependent oxidoreductase [Acidimicrobiales bacterium] diamond 249 43.1 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
29021237 29021237 PRJNA795983_S_NODE_37628_length_248_cov_1.497143_g37503_i0 PRJNA795983 37628 248 1.497143 3.71291464 Microbacteriaceae 85023 Bacteria Bacteria 140 9.419999999999999e-39   NR MCX8529345.1 1969481 g37503 i0 84.6 12.2661290322581 78 12 94.4 0 248 15 98 175 MCX8529345.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Rhodoluna sp.] diamond 3042 140 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna sp.
29273288 29273288 PRJNA795983_S_NODE_29929_length_268_cov_1.241026_g29804_i0 PRJNA795983 29929 268 1.241026 3.32594968 Bacillati 1783272 Bacteria Bacteria 97.8 2.62e-22   NR HUA46877.1 2586742 g29804 i0 50 3.66044776119403 86 43 96.3 0 263 6 30 115 HUA46877.1 spherulation-specific family 4 protein [Solirubrobacteraceae bacterium] diamond 981 98.6 0.991886409736308 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
29327408 29327408 PRJNA795983_S_NODE_37269_length_249_cov_0.875000_g37144_i0 PRJNA795983 37269 249 0.875 2.17875 Arthrobacter russicus 172040 Bacteria Bacteria 81.3 6.77e-16   NR WP_309798846.1 172040 g37144 i0 97.6 0.493975903614458 41 1 49.4 0 1 123 316 356 WP_309798846.1 D-2-hydroxyacid dehydrogenase [Arthrobacter russicus] diamond 123 81.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter russicus
29390784 29390784 PRJNA795983_S_NODE_17429_length_321_cov_2.080645_g17304_i0 PRJNA795983 17429 321 2.080645 6.67887045 Kribbella sp. NBC_ 1871183 Bacteria Bacteria 57 9.29e-7   NR WP_328992918.1 2903578 g17304 i0 41 0.775700934579439 83 46 77.6 2 297 49 133 212 WP_328992918.1 VWA domain-containing protein [Kribbella sp. NBC_01245] diamond 249 57 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella sp. NBC_01245
29611343 29611343 PRJNA795983_S_NODE_15610_length_333_cov_1.438462_g15485_i0 PRJNA795983 15610 333 1.438462 4.79007846 Micromonospora craterilacus 1655439 Bacteria Bacteria 84 3.1e-16   NR WP_111219210.1 1655439 g15485 i0 54.4 0.612612612612613 68 30 60.4 1 331 131 32 99 WP_111219210.1 glutamine synthetase family protein [Micromonospora craterilacus] diamond 204 84 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora craterilacus
29832675 29832675 PRJNA795983_S_NODE_25111_length_285_cov_1.075472_g24986_i0 PRJNA795983 25111 285 1.075472 3.0650952 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 57 5.92e-7   NR MEA2274717.1 2586742 g24986 i0 38.4 2.41052631578947 86 39 89.5 3 13 267 143 215 MEA2274717.1 tyrosinase [Solirubrobacteraceae bacterium] diamond 687 57 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
29864248 29864248 PRJNA795983_S_NODE_18091_length_318_cov_1.110204_g17966_i0 PRJNA795983 18091 318 1.110204 3.53044872 Actinomadura nitritigenes 134602 Bacteria Bacteria 43.5 0.0456   NR WP_208265424.1 134602 g17966 i0 52.8 0.5 53 23 48.1 1 27 179 292 344 WP_208265424.1 PrsW family glutamic-type intramembrane protease [Actinomadura nitritigenes] diamond 159 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura nitritigenes
30307098 30307098 PRJNA795983_S_NODE_21072_length_302_cov_1.633188_g20947_i0 PRJNA795983 21072 302 1.633188 4.93222776 Actinomycetota bacterium 2900548 Bacteria Bacteria 116 5.799999999999998e-29   NR TML60671.1 2900548 g20947 i0 62 0.993377483443709 100 35 99.3 2 302 3 223 319 TML60671.1 MAG: fructose-bisphosphate aldolase class I [Actinomycetota bacterium] diamond 300 116 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30307115 30307115 PRJNA795983_S_NODE_40112_length_245_cov_0.889535_g39987_i0 PRJNA795983 40112 245 0.889535 2.17936075 Janibacter melonis 262209 Bacteria Bacteria 94.4 4.65e-22   NR MBD5832155.1 262209 g39987 i0 57.5 0.979591836734694 80 34 98 0 241 2 56 135 MBD5832155.1 XRE family transcriptional regulator [Janibacter melonis] diamond 240 94.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Janibacter Janibacter melonis
30370242 30370242 PRJNA795983_S_NODE_45132_length_203_cov_4.492308_g45007_i0 PRJNA795983 45132 203 4.492308 9.11938524 Actinomycetota bacterium 2900548 Bacteria Bacteria 65.9 5.59e-12   NR MBS1889909.1 2900548 g45007 i0 46.9 0.945812807881773 64 27 84.2 1 171 1 29 92 MBS1889909.1 hypothetical protein [Actinomycetota bacterium] diamond 192 65.9 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30970213 30970213 PRJNA795983_S_NODE_22474_length_295_cov_2.977477_g22349_i0 PRJNA795983 22474 295 2.977477 8.78355715 Actinacidiphila rubida 310780 Bacteria Bacteria 102 2.49e-25   NR WP_141726314.1 310780 g22349 i0 56.6 1.52542372881356 76 33 77.3 0 294 67 60 135 WP_141726314.1 cellulase family glycosylhydrolase, partial [Actinacidiphila rubida] diamond 450 102 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Actinacidiphila Actinacidiphila rubida
31096391 31096391 PRJNA795983_S_NODE_44155_length_231_cov_3.443038_g44030_i0 PRJNA795983 44155 231 3.443038 7.95341778 Actinomycetes bacterium 1883427 Bacteria Bacteria 82.4 1.39e-17   NR HEY8557724.1 1883427 g44030 i0 57.4 0.883116883116883 68 29 88.3 0 204 1 35 102 HEY8557724.1 hypothetical protein [Actinomycetes bacterium] diamond 204 82.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinomycetes bacterium
31222662 31222662 PRJNA795983_S_NODE_37295_length_249_cov_0.875000_g37170_i0 PRJNA795983 37295 249 0.875 2.17875 Gaiellaceae bacterium 2838783 Bacteria Bacteria 43.9 0.00664   NR HEU4973293.1 2838783 g37170 i0 40.4 0.686746987951807 57 32 66.3 1 5 169 52 108 HEU4973293.1 hypothetical protein [Gaiellaceae bacterium] diamond 171 43.9 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales Gaiellaceae   Gaiellaceae bacterium
31254460 31254460 PRJNA795983_S_NODE_44255_length_230_cov_2.770701_g44130_i0 PRJNA795983 44255 230 2.770701 6.3726123 Actinomycetota bacterium 2900548 Bacteria Bacteria 113 2.7199999999999997e-30   NR MBS1889789.1 2900548 g44130 i0 69.7 0.991304347826087 76 20 99.1 1 1 228 18 90 MBS1889789.1 hypothetical protein [Actinomycetota bacterium] diamond 228 113 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31485281 31485281 PRJNA795983_S_NODE_36956_length_249_cov_1.534091_g36831_i0 PRJNA795983 36956 249 1.534091 3.81988659 Bacillati 1783272 Bacteria Bacteria 119 1.38e-29   NR WP_258943101.1 46163 g36831 i0 60.8 13.3614457831325 79 31 95.2 0 248 12 397 475 WP_258943101.1 cellulase family glycosylhydrolase [Actinomadura luteofluorescens] diamond 3327 120 0.991666666666667 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura luteofluorescens
31643053 31643053 PRJNA795983_S_NODE_26096_length_281_cov_1.341346_g25971_i0 PRJNA795983 26096 281 1.341346 3.76918226 Actinomycetota 201174 Bacteria Bacteria 119 2.47e-31   NR WP_076826292.1 1745382 g25971 i0 60.9 12.6832740213523 92 35 98.2 1 3 278 32 122 WP_076826292.1 3-oxoacid CoA-transferase subunit B [Frankia sp. CcI49] diamond 3564 119 1 Bacteria   Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia sp. CcI49
31643054 31643054 PRJNA795983_S_NODE_33956_length_256_cov_1.256831_g33831_i0 PRJNA795983 33956 256 1.256831 3.21748736 PVC group 1783257 Bacteria Bacteria 126 2.46e-34   NR WP_357328706.1 58117 g33831 i0 73.8 74.89453125 84 18 98.4 2 254 3 97 176 WP_357328706.1 adenosylhomocysteinase, partial [Microbispora rosea] diamond 19173 127 0.992125984251969 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Microbispora Microbispora rosea
31674703 31674703 PRJNA795983_S_NODE_35637_length_251_cov_1.730337_g35512_i0 PRJNA795983 35637 251 1.730337 4.34314587 Rubrobacter 42255 Bacteria Bacteria 111 4.56e-28   NR MBV9455836.1 2036010 g35512 i0 63.3 2.83266932270916 79 29 94.4 0 239 3 10 88 MBV9455836.1 hypothetical protein [Rubrobacter sp.] diamond 711 111 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter sp.
31760536 31760536 PRJNA795983_S_NODE_9337_length_398_cov_1.676923_g9212_i0 PRJNA795983 9337 398 1.676923 6.67415354 Actinomycetota bacterium 2900548 Bacteria Bacteria 71.2 2.93e-12   NR MBS1889954.1 2900548 g9212 i0 39.4 0.708542713567839 94 57 70.9 0 2 283 8 101 MBS1889954.1 hypothetical protein [Actinomycetota bacterium] diamond 282 71.2 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32013677 32013677 PRJNA795983_S_NODE_13358_length_351_cov_1.082734_g13233_i0 PRJNA795983 13358 351 1.082734 3.80039634 Actinomadura physcomitrii 2650748 Bacteria Bacteria 46.6 0.00486   NR WP_151597820.1 2650748 g13233 i0 36 0.854700854700855 100 53 76.1 4 68 334 92 191 WP_151597820.1 phosphotransferase [Actinomadura physcomitrii] diamond 300 46.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura physcomitrii
32013694 32013694 PRJNA795983_S_NODE_38578_length_247_cov_0.885057_g38453_i0 PRJNA795983 38578 247 0.885057 2.18609079 Lawsonella clevelandensis 1528099 Bacteria Bacteria 149 1.6199999999999996e-40   NR WP_306559022.1 1528099 g38453 i0 100 1.96761133603239 81 0 98.4 0 245 3 52 132 WP_306559022.1 NlpC/P60 family protein [Lawsonella clevelandensis] diamond 486 149 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
32076978 32076978 PRJNA795983_S_NODE_9618_length_394_cov_1.121495_g9493_i0 PRJNA795983 9618 394 1.121495 4.4186903 Actinomycetota bacterium 2900548 Bacteria Bacteria 50.1 1.72e-4   NR MBS1890199.1 2900548 g9493 i0 54.5 0.33502538071066 44 20 33.5 0 134 3 4 47 MBS1890199.1 TLC domain-containing protein [Actinomycetota bacterium] diamond 132 50.1 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32402624 32402624 PRJNA795983_S_NODE_41559_length_243_cov_0.905882_g41434_i0 PRJNA795983 41559 243 0.905882 2.20129326 Bacteria 2 Bacteria Bacteria 42.4 0.0232   NR WP_074361844.1 36809 g41434 i0 36 3.55555555555556 75 38 90.1 3 24 242 51 117 WP_074361844.1 VOC family protein, partial [Mycobacteroides abscessus] diamond 864 42.7 0.992974238875878 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus
32529278 32529278 PRJNA795983_S_NODE_21899_length_298_cov_1.711111_g21774_i0 PRJNA795983 21899 298 1.711111 5.09911078 Bacteria 2 Bacteria Bacteria 80.1 3.17e-16   NR WP_376973253.1 1667 g21774 i0 45.6 3.6241610738255 90 44 89.6 2 297 31 32 117 WP_376973253.1 NADPH-dependent FMN reductase [Arthrobacter sp.] diamond 1080 80.9 0.990111248454882 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp.
32614619 32614619 PRJNA795983_S_NODE_25880_length_282_cov_1.105263_g25755_i0 PRJNA795983 25880 282 1.105263 3.11684166 Actinomycetota bacterium 2900548 Bacteria Bacteria 93.2 6.85e-22   NR MBS1889828.1 2900548 g25755 i0 98.9 1 94 1 100 0 282 1 2 95 MBS1889828.1 hypothetical protein [Actinomycetota bacterium] diamond 282 93.2 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32780982 32780982 PRJNA795983_S_NODE_4660_length_514_cov_3.068027_g4536_i0 PRJNA795983 4660 514 3.068027 15.76965878 Actinomycetes 1760 Bacteria Bacteria 50.1 0.00149   NR WP_076988187.1 1933779 g4536 i0 46 3.09922178988327 50 27 29.2 0 165 16 614 663 WP_076988187.1 beta-galactosidase [Actinosynnema sp. ALI-1.44] diamond 1593 50.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinosynnema Actinosynnema sp. ALI-1.44

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;