RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA795983" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA795983 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12696169 12696169 PRJNA795983_S_NODE_9710_length_392_cov_2.388715_g9585_i0 PRJNA795983 9710 392 2.388715 9.3637628 Gammaretrovirus 153135 Viruses Viruses 253 1.73e-75   NR NP_040333.1 11795 g9585 i0 97.7 11.8622448979592 129 3 98.7 0 390 4 326 454 NP_040333.1 RNA-dependent DNA polymerase, partial [Friend murine leukemia virus] diamond 4650 253 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
21182417 21182417 PRJNA795983_S_NODE_10417_length_383_cov_1.948387_g10292_i0 PRJNA795983 10417 383 1.948387 7.46232221 Gammaretrovirus 153135 Viruses Viruses 233 3.7899999999999986e-68   NR ABU54795.1 11786 g10292 i0 95.7 9.98694516971279 116 5 90.9 0 33 380 657 772 ABU54795.1 gag-pro-pol polyprotein [Murine leukemia virus] diamond 3825 235 0.991489361702128 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30907109 30907109 PRJNA795983_S_NODE_17014_length_324_cov_0.968127_g16889_i0 PRJNA795983 17014 324 0.968127 3.13673148 Moloney murine leukemia virus 11801 Viruses Viruses 216 1.02e-62   NR NP_057933.2 11801 g16889 i0 98.1 2.94444444444444 106 2 98.1 0 320 3 1094 1199 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 954 216 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
31390342 31390342 PRJNA795983_S_NODE_24176_length_288_cov_1.860465_g24051_i0 PRJNA795983 24176 288 1.860465 5.3581392 Gammaretrovirus 153135 Viruses Viruses 198 1.7999999999999997e-56   NR AMK06426.1 11786 g24051 i0 98.9 11.875 95 1 99 0 287 3 975 1069 AMK06426.1 putative gag-pro-pol polyprotein [Murine leukemia virus] diamond 3420 200 0.99 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;