RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA795663" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA795663 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27338378 27338378 PRJNA795663_S_NODE_6763_length_228_cov_2.005236_g6658_i0 PRJNA795663 6763 228 2.005236 4.57193808 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 63.5 2.63e-10   NR MDZ7630460.1 2026741 g6658 i0 61.7 0.618421052631579 47 18 61.8 0 2 142 124 170 MDZ7630460.1 F0F1 ATP synthase subunit delta [Gemmatimonadaceae bacterium] diamond 141 63.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30875279 30875279 PRJNA795663_S_NODE_2594_length_352_cov_2.079365_g2489_i0 PRJNA795663 2594 352 2.079365 7.3193648 Longimicrobium sp. 2029185 Bacteria Bacteria 52.8 1.87e-5   NR HEX8212487.1 2029185 g2489 i0 53.3 1.09090909090909 45 21 38.4 0 98 232 3 47 HEX8212487.1 transposase [Longimicrobium sp.] diamond 384 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32803441 32803441 PRJNA795663_S_NODE_18760_length_151_cov_1.017544_g18655_i0 PRJNA795663 18760 151 1.017544 1.53649144 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 52.4 1.8e-6   NR MDZ7630460.1 2026741 g18655 i0 55.1 0.973509933774834 49 22 97.4 0 1 147 25 73 MDZ7630460.1 F0F1 ATP synthase subunit delta [Gemmatimonadaceae bacterium] diamond 147 52.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;