RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA795663" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA795663 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26873410 26873410 PRJNA795663_S_NODE_15901_length_160_cov_2.186992_g15796_i0 PRJNA795663 15901 160 2.186992 3.4991872 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 87.8 2.21e-20   NR XP_004333194.1 1257118 g15796 i0 73.6 1.9875 53 14 99.4 0 159 1 34 86 XP_004333194.1 guanine nucleotidebinding protein alpha-1 subunit [Acanthamoeba castellanii str. Neff] diamond 318 88.2 0.99546485260771 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28253916 28253916 PRJNA795663_S_NODE_9706_length_195_cov_2.183544_g9601_i0 PRJNA795663 9706 195 2.183544 4.2579108 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 82.4 3.48e-18   NR XP_004337874.1 1257118 g9601 i0 69.1 0.846153846153846 55 16 84.6 1 167 3 23 76 XP_004337874.1 uncharacterized protein ACA1_187480 [Acanthamoeba castellanii str. Neff] diamond 165 82.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29359128 29359128 PRJNA795663_S_NODE_8449_length_207_cov_2.029412_g8344_i0 PRJNA795663 8449 207 2.029412 4.20088284 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.1 5.14e-12   NR XP_004337380.1 1257118 g8344 i0 48.5 1.91304347826087 66 33 94.2 1 1 195 309 374 XP_004337380.1 GTPaseactivating protein [Acanthamoeba castellanii str. Neff] diamond 396 70.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29927626 29927626 PRJNA795663_S_NODE_3011_length_329_cov_2.503425_g2906_i0 PRJNA795663 3011 329 2.503425 8.23626825 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 161 5.46e-44   NR XP_004368005.1 1257118 g2906 i0 66.1 1.98784194528875 109 37 99.4 0 328 2 416 524 XP_004368005.1 GTPase activating Rap/RanGAP domainlike 3, putative [Acanthamoeba castellanii str. Neff] diamond 654 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;