RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA795663" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA795663 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27843336 27843336 PRJNA795663_S_NODE_11944_length_180_cov_1.062937_g11839_i0 PRJNA795663 11944 180 1.062937 1.9132866 Ktedonobacterales bacterium 2306968 Bacteria Bacteria 65.1 2.06e-10   NR HEX8036088.1 2306968 g11839 i0 55.4 4.7 56 25 93.3 0 179 12 631 686 HEX8036088.1 cation-transporting P-type ATPase [Ktedonobacterales bacterium] diamond 846 65.1 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales     Ktedonobacterales bacterium
28916796 28916796 PRJNA795663_S_NODE_13868_length_169_cov_1.727273_g13763_i0 PRJNA795663 13868 169 1.727273 2.91909137 Ktedonospora formicarum 2778364 Bacteria Bacteria 88.6 9.83e-19   NR WP_220192467.1 2778364 g13763 i0 80.8 0.923076923076923 52 10 92.3 0 156 1 385 436 WP_220192467.1 ATP-binding protein [Ktedonospora formicarum] diamond 156 88.6 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Ktedonobacteraceae Ktedonospora Ktedonospora formicarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;