RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA795663" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA795663 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27726795 27726795 PRJNA795663_S_NODE_8024_length_212_cov_1.514286_g7919_i0 PRJNA795663 8024 212 1.514286 3.21028632 Bacteria 2 Bacteria Bacteria 140 3.01e-38   NR MBX3378930.1 2026777 g7919 i0 91.4 1.9811320754717 70 6 99.1 0 211 2 310 379 MBX3378930.1 aminopeptidase [Phycisphaeraceae bacterium] diamond 420 140 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
31381189 31381189 PRJNA795663_S_NODE_5356_length_252_cov_3.283721_g5251_i0 PRJNA795663 5356 252 3.283721 8.27497692 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 112 7.540000000000001e-27   NR MBB76640.1 2026779 g5251 i0 62.7 0.988095238095238 83 31 98.8 0 250 2 334 416 MBB76640.1 hypothetical protein [Planctomycetaceae bacterium] diamond 249 112 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium
31421787 31421787 PRJNA795663_S_NODE_10596_length_188_cov_2.543046_g10491_i0 PRJNA795663 10596 188 2.543046 4.78092648 root 1 Root_unresolved Root_unresolved 80.1 1.2e-15   NR MBB76640.1 2026779 g10491 i0 67.2 1.9468085106383 61 19 97.3 1 184 2 105 164 MBB76640.1 hypothetical protein [Planctomycetaceae bacterium] diamond 366 80.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium
32203536 32203536 PRJNA795663_S_NODE_13118_length_173_cov_1.705882_g13013_i0 PRJNA795663 13118 173 1.705882 2.95117586 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 63.9 4.81e-10   NR HUJ09072.1 2499141 g13013 i0 62.5 2.13294797687861 48 15 79.8 2 32 169 3 49 HUJ09072.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 369 63.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;