RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA793147" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA793147 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4606287 4606287 PRJNA793147_P_NODE_42904_length_257_cov_1.813830_g42638_i0 PRJNA793147 42904 257 1.81383 4.6615431 Visna-maedi virus 2169971 Viruses Viruses 184 9.92e-52   NR WZD86487.1 2169971 g42638 i0 89.4 2.97665369649805 85 9 99.2 0 3 257 368 452 WZD86487.1 env protein [Visna-maedi virus] diamond 765 184 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus ovivismae
22454842 22454842 PRJNA793147_P_NODE_24398_length_337_cov_1.727612_g24132_i0 PRJNA793147 24398 337 1.727612 5.82205244 Visna-maedi virus 2169971 Viruses Viruses 180 5.04e-50   NR QUF61616.1 2169971 g24132 i0 75.4 2.01186943620178 114 26 99.7 1 337 2 502 615 QUF61616.1 Env protain [Visna-maedi virus] diamond 678 180 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus ovivismae
28380221 28380221 PRJNA793147_P_NODE_41426_length_262_cov_1.409326_g41160_i0 PRJNA793147 41426 262 1.409326 3.69243412 Small ruminant lentivirus 254355 Viruses Viruses 102 1.13e-24   NR QCW05417.1 254355 g41160 i0 58.5 0.938931297709924 82 33 93.9 1 261 16 148 228 QCW05417.1 envelope protein, partial [Small ruminant lentivirus] diamond 246 102 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus capartenc

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;