RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA793147" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA793147 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8431185 8431185 PRJNA793147_P_NODE_50627_length_235_cov_1.445783_g50361_i0 PRJNA793147 50627 235 1.445783 3.39759005 Isosphaeraceae bacterium 2691532 Bacteria Bacteria 89 1.73e-18   NR HEX8202549.1 2691532 g50361 i0 64.7 0.868085106382979 68 23 86.8 1 31 234 454 520 HEX8202549.1 hypothetical protein [Isosphaeraceae bacterium] diamond 204 89 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae   Isosphaeraceae bacterium
26904853 26904853 PRJNA793147_P_NODE_39141_length_269_cov_1.315000_g38875_i0 PRJNA793147 39141 269 1.315 3.53735 root 1 Root_unresolved Root_unresolved 52.8 1.38e-5   NR MFA7345307.1 2832348 g38875 i0 44.3 1.46096654275093 70 38 78.1 1 57 266 20 88 MFA7345307.1 2-enoyl thioester reductase domain-containing protein [Terrimicrobiaceae bacterium] diamond 393 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
27252529 27252529 PRJNA793147_P_NODE_46103_length_248_cov_1.296089_g45837_i0 PRJNA793147 46103 248 1.296089 3.2143007199999998 Pseudomonadati 3379134 Bacteria Bacteria 81.3 1.12e-15   NR MEI7912694.1 2026799 g45837 i0 52.4 4.95967741935484 82 39 99.2 0 248 3 118 199 MEI7912694.1 amino acid adenylation domain-containing protein [Verrucomicrobiota bacterium] diamond 1230 81.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28633064 28633064 PRJNA793147_P_NODE_49547_length_238_cov_1.295858_g49281_i0 PRJNA793147 49547 238 1.295858 3.08414204 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 166 1.06e-46   NR MEN9631754.1 2026799 g49281 i0 93.7 2.98739495798319 79 5 99.6 0 237 1 348 426 MEN9631754.1 Xanthan lyase precursor [Verrucomicrobiota bacterium] diamond 711 166 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29579783 29579783 PRJNA793147_P_NODE_33130_length_291_cov_3.887387_g32864_i0 PRJNA793147 33130 291 3.887387 11.31229617 Thermoguttaceae bacterium 2691551 Bacteria Bacteria 53.1 1.47e-5   NR MBQ9372032.1 2691551 g32864 i0 40.3 0.742268041237113 72 42 74.2 1 6 221 969 1039 MBQ9372032.1 fibronectin type III domain-containing protein [Thermoguttaceae bacterium] diamond 216 53.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Thermoguttaceae   Thermoguttaceae bacterium
31927860 31927860 PRJNA793147_P_NODE_60537_length_227_cov_0.911392_g60271_i0 PRJNA793147 60537 227 0.911392 2.06885984 Candidatus Protochlamydia 282132 Bacteria Bacteria 129 7.24e-33   NR WP_068466348.1 1414722 g60271 i0 86.7 1.98237885462555 75 10 99.1 0 226 2 336 410 WP_068466348.1 NfeD family protein [Candidatus Protochlamydia phocaeensis] diamond 450 129 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia phocaeensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;