RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA793147" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA793147 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27410882 27410882 PRJNA793147_P_NODE_34863_length_284_cov_4.488372_g34597_i0 PRJNA793147 34863 284 4.488372 12.74697648 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 45.8 0.00479   NR EPY37774.1 59799 g34597 i0 27.8 3.07394366197183 97 67 99.3 1 284 3 319 415 EPY37774.1 N-myristoyl transferase [Angomonas deanei] diamond 873 46.2 0.991341991341991 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Angomonas Angomonas deanei
29958992 29958992 PRJNA793147_P_NODE_27291_length_319_cov_1.148000_g27025_i0 PRJNA793147 27291 319 1.148 3.66212 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 75.1 2.1e-14   NR KAG8346875.1 5699 g27025 i0 43.3 0.846394984326019 90 50 84.6 1 6 275 62 150 KAG8346875.1 hypothetical protein TRVL_02287 [Trypanosoma vivax] diamond 270 75.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;