RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA793147" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA793147 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27464761 27464761 PRJNA793147_P_NODE_61343_length_226_cov_2.292994_g61077_i0 PRJNA793147 61343 226 2.292994 5.18216644 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 82.8 7.17e-17   NR PRP80728.1 1890364 g61077 i0 52 0.995575221238938 75 36 99.6 0 1 225 208 282 PRP80728.1 ras-related protein Rab-2A [Planoprotostelium fungivorum] diamond 225 82.8 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29683611 29683611 PRJNA793147_P_NODE_60490_length_227_cov_0.911392_g60224_i0 PRJNA793147 60490 227 0.911392 2.06885984 Evosea 2605435 Evosea other_Eukaryota 111 1.71e-26   NR XP_003289866.1 5786 g60224 i0 72 3.88546255506608 75 21 99.1 0 3 227 10 84 XP_003289866.1 vacuolar proton ATPase 100-kDa subunit [Dictyostelium purpureum] diamond 882 112 0.991071428571429 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
31476019 31476019 PRJNA793147_P_NODE_36636_length_278_cov_1.033493_g36370_i0 PRJNA793147 36636 278 1.033493 2.87311054 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 105 3.6499999999999998e-25   NR PRP77116.1 1890364 g36370 i0 53.8 1.00359712230216 93 42 99.3 1 1 276 111 203 PRP77116.1 palmitoyl-protein thioesterase [Planoprotostelium fungivorum] diamond 279 105 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31887018 31887018 PRJNA793147_P_NODE_50017_length_237_cov_1.041667_g49751_i0 PRJNA793147 50017 237 1.041667 2.46875079 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 65.1 4.46e-11   NR KAH3765086.1 1580589 g49751 i0 83.8 0.468354430379747 37 6 46.8 0 65 175 81 117 KAH3765086.1 small nuclear ribonucleoprotein Sm D2 [Pelomyxa schiedti] diamond 111 65.1 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;