RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA792582" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA792582 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27211624 27211624 PRJNA792582_P_NODE_58842_length_241_cov_2.297619_g58028_i0 PRJNA792582 58842 241 2.297619 5.53726179 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 45.8 0.00108   NR HEX8384703.1 2838334 g58028 i0 46.5 1.73029045643154 71 24 74.7 4 48 227 3 70 HEX8384703.1 hypothetical protein [Rubricoccaceae bacterium] diamond 417 45.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
29737659 29737659 PRJNA792582_P_NODE_54610_length_246_cov_0.890173_g53796_i0 PRJNA792582 54610 246 0.890173 2.18982558 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 48.5 3.57e-4   NR MDX1419468.1 2838334 g53796 i0 44.8 2.30487804878049 67 24 81.7 1 4 204 358 411 MDX1419468.1 T9SS type A sorting domain-containing protein [Rubricoccaceae bacterium] diamond 567 48.5 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
30748878 30748878 PRJNA792582_P_NODE_38614_length_281_cov_1.918269_g37800_i0 PRJNA792582 38614 281 1.918269 5.39033589 Rhodothermales bacterium 2306054 Bacteria Bacteria 74.7 2.85e-13   NR HYE57945.1 2306054 g37800 i0 59.5 0.843416370106762 79 32 84.3 0 1 237 24 102 HYE57945.1 HAMP domain-containing protein [Rhodothermales bacterium] diamond 237 74.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;