RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA792582" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA792582 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27559129 27559129 PRJNA792582_P_NODE_48504_length_254_cov_1.591160_g47690_i0 PRJNA792582 48504 254 1.59116 4.0415464 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 120 1.97e-29   NR XP_002682820.1 5762 g47690 i0 79.7 0.81496062992126 69 14 81.5 0 252 46 405 473 XP_002682820.1 regulator of G-protein signaling protein [Naegleria gruberi] diamond 207 120 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
28159448 28159448 PRJNA792582_P_NODE_52085_length_249_cov_0.875000_g51271_i0 PRJNA792582 52085 249 0.875 2.17875 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 152 3.989999999999999e-41   NR XP_002678891.1 5762 g51271 i0 81.7 0.987951807228916 82 15 98.8 0 2 247 272 353 XP_002678891.1 uncharacterized protein NAEGRDRAFT_48054 [Naegleria gruberi] diamond 246 152 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
28664467 28664467 PRJNA792582_P_NODE_52907_length_248_cov_0.880000_g52093_i0 PRJNA792582 52907 248 0.88 2.1824 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 96.3 5.77e-21   NR XP_002683056.1 5762 g52093 i0 100 0.592741935483871 49 0 59.3 0 102 248 39 87 XP_002683056.1 uncharacterized protein NAEGRDRAFT_29347 [Naegleria gruberi] diamond 147 96.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
29327362 29327362 PRJNA792582_P_NODE_56009_length_245_cov_0.883721_g55195_i0 PRJNA792582 56009 245 0.883721 2.16511645 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 128 5.969999999999999e-35   NR XP_002676923.1 5762 g55195 i0 80.2 0.991836734693878 81 11 99.2 1 1 243 56 131 XP_002676923.1 uncharacterized protein NAEGRDRAFT_56173 [Naegleria gruberi] diamond 243 128 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30748888 30748888 PRJNA792582_P_NODE_51814_length_249_cov_0.875000_g51000_i0 PRJNA792582 51814 249 0.875 2.17875 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 166 4.37e-46   NR XP_002675496.1 5762 g51000 i0 92.7 0.987951807228916 82 6 98.8 0 247 2 35 116 XP_002675496.1 arfGTPase-activating protein [Naegleria gruberi] diamond 246 166 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30780460 30780460 PRJNA792582_P_NODE_57794_length_243_cov_0.905882_g56980_i0 PRJNA792582 57794 243 0.905882 2.20129326 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 90.5 5.73e-19   NR XP_002678538.1 5762 g56980 i0 79.6 0.666666666666667 54 11 66.7 0 238 77 941 994 XP_002678538.1 uncharacterized protein NAEGRDRAFT_48198 [Naegleria gruberi] diamond 162 90.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31485258 31485258 PRJNA792582_P_NODE_56416_length_244_cov_0.900585_g55602_i0 PRJNA792582 56416 244 0.900585 2.1974274 Naegleria 5761 Heterolobosea other_Eukaryota 72.4 1.38e-12   NR CAG4708096.1 5763 g55602 i0 40.2 3.76229508196721 102 38 99.6 2 244 2 805 904 CAG4708096.1 unnamed protein product, partial [Naegleria fowleri] diamond 918 72.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
32108537 32108537 PRJNA792582_P_NODE_56738_length_244_cov_0.900585_g55924_i0 PRJNA792582 56738 244 0.900585 2.1974274 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 144 2.989999999999999e-38   NR XP_002682755.1 5762 g55924 i0 83.8 0.983606557377049 80 13 98.4 0 3 242 364 443 XP_002682755.1 N-acetylglucosaminylaminotransferase [Naegleria gruberi] diamond 240 144 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;