RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA792582" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA792582 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
777089 777089 PRJNA792582_P_NODE_52761_length_248_cov_0.880000_g51947_i0 PRJNA792582 52761 248 0.88 2.1824 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 137 1.6999999999999998e-36   NR MCB0412082.1 2053517 g51947 i0 78 2.9758064516129 82 18 99.2 0 248 3 136 217 MCB0412082.1 DEAD/DEAH box helicase [Bdellovibrionales bacterium] diamond 738 137 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
21617763 21617763 PRJNA792582_P_NODE_59697_length_241_cov_0.886905_g58883_i0 PRJNA792582 59697 241 0.886905 2.13744105 Peredibacter starrii 28202 Bacteria Bacteria 127 5.579999999999998e-35   NR WP_321393881.1 28202 g58883 i0 72 1.15767634854772 93 10 95.9 1 234 4 12 104 WP_321393881.1 DUF3015 family protein [Peredibacter starrii] diamond 279 127 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
27401572 27401572 PRJNA792582_P_NODE_57563_length_243_cov_0.905882_g56749_i0 PRJNA792582 57563 243 0.905882 2.20129326 Bdellovibrio sp. SKB1291214 1732569 Bacteria Bacteria 67 3.02e-12   NR WP_088616025.1 1732569 g56749 i0 54.2 2.69135802469136 72 33 88.9 0 223 8 1 72 WP_088616025.1 ATP synthase F0 subunit C [Bdellovibrio sp. SKB1291214] diamond 654 67 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. SKB1291214
27654197 27654197 PRJNA792582_P_NODE_54404_length_246_cov_1.323699_g53590_i0 PRJNA792582 54404 246 1.323699 3.25629954 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 56.6 4.19e-8   NR MCB0331116.1 2053517 g53590 i0 46.2 3.26829268292683 65 31 79.3 1 204 10 16 76 MCB0331116.1 50S ribosomal protein L23 [Bdellovibrionales bacterium] diamond 804 56.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28317143 28317143 PRJNA792582_P_NODE_44766_length_265_cov_1.244792_g43952_i0 PRJNA792582 44766 265 1.244792 3.2986988 Bdellovibrio sp. 28-41-41 1970323 Bacteria Bacteria 102 4.05e-24   NR OYZ24383.1 1970323 g43952 i0 61.8 0.860377358490566 76 28 86 1 36 263 166 240 OYZ24383.1 MAG: hypothetical protein B7Y39_01625 [Bdellovibrio sp. 28-41-41] diamond 228 102 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. 28-41-41
29620326 29620326 PRJNA792582_P_NODE_39330_length_279_cov_2.072816_g38516_i0 PRJNA792582 39330 279 2.072816 5.78315664 Pseudomonadati 3379134 Bacteria Bacteria 61.2 1.9e-9   NR MBK7891702.1 2053517 g38516 i0 48.4 2.26881720430108 64 33 68.8 0 241 50 7 70 MBK7891702.1 flagellar basal body rod protein FlgB [Bdellovibrionales bacterium] diamond 633 61.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31136913 31136913 PRJNA792582_P_NODE_54675_length_246_cov_0.890173_g53861_i0 PRJNA792582 54675 246 0.890173 2.18982558 Bdellovibrionota 3018035 Bacteria Bacteria 69.3 1.39e-11   NR WP_325144650.1 1971216 g53861 i0 82.9 0.841463414634146 35 6 42.7 0 244 140 142 176 WP_325144650.1 IS3 family transposase [Oligoflexus sp.] diamond 207 69.3 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;