RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA792582" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA792582 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27306771 27306771 PRJNA792582_P_NODE_57263_length_243_cov_1.358824_g56449_i0 PRJNA792582 57263 243 1.358824 3.30194232 Deltaproteobacteria bacterium IMCC39524 3039107 Bacteria Bacteria 88.6 1.89e-18   NR MDG5466834.1 3039107 g56449 i0 53.2 2.96296296296296 79 34 97.5 2 242 6 175 250 MDG5466834.1 polysaccharide pyruvyl transferase family protein [Deltaproteobacteria bacterium IMCC39524] diamond 720 88.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium IMCC39524
31231817 31231817 PRJNA792582_P_NODE_5215_length_722_cov_2.135593_g4486_i0 PRJNA792582 5215 722 2.135593 15.41898146 Pseudomonadota 1224 Bacteria Bacteria 143 1.4e-38   NR OGQ51815.1 1797882 g4486 i0 42.3 3.54432132963989 213 104 83.1 3 694 95 2 208 OGQ51815.1 MAG: hypothetical protein A3J24_13060 [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8] diamond 2559 143 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;