RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA792582" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA792582 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28885310 28885310 PRJNA792582_P_NODE_42528_length_271_cov_1.409091_g41714_i0 PRJNA792582 42528 271 1.409091 3.81863661 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 60.5 2.18e-8   NR PRP81416.1 1890364 g41714 i0 44.4 0.797047970479705 72 40 79.7 0 225 10 95 166 PRP81416.1 hypothetical protein PROFUN_10946, partial [Planoprotostelium fungivorum] diamond 216 60.5 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29169730 29169730 PRJNA792582_P_NODE_47989_length_255_cov_3.109890_g47175_i0 PRJNA792582 47989 255 3.10989 7.9302195 Polysphondylium violaceum 133409 Evosea other_Eukaryota 81.3 7.02e-16   NR KAF2078060.1 133409 g47175 i0 59.2 2.35294117647059 71 29 83.5 0 43 255 160 230 KAF2078060.1 hypothetical protein CYY_000611 [Polysphondylium violaceum] diamond 600 81.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
30401808 30401808 PRJNA792582_P_NODE_54153_length_246_cov_2.231214_g53339_i0 PRJNA792582 54153 246 2.231214 5.48878644 Heterostelium album PN5 2086695 Evosea other_Eukaryota 49.7 2.55e-5   NR XP_020429212.1 670386 g53339 i0 46.9 0.597560975609756 49 26 59.8 0 244 98 7 55 XP_020429212.1 hypothetical protein PPL_09836 [Heterostelium album PN500] diamond 147 49.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
31665538 31665538 PRJNA792582_P_NODE_25157_length_344_cov_2.763838_g24343_i0 PRJNA792582 25157 344 2.763838 9.50760272 Heterostelium album PN5 2086695 Evosea other_Eukaryota 46.2 0.00679   NR XP_020436579.1 670386 g24343 i0 42.9 0.366279069767442 42 24 36.6 0 1 126 5 46 XP_020436579.1 hypothetical protein PPL_02499 [Heterostelium album PN500] diamond 126 46.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
32140240 32140240 PRJNA792582_P_NODE_51938_length_249_cov_0.875000_g51124_i0 PRJNA792582 51938 249 0.875 2.17875 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 63.9 1.33e-9   NR XP_004348346.1 1257118 g51124 i0 53.2 0.566265060240964 47 22 56.6 0 190 50 209 255 XP_004348346.1 uncharacterized protein ACA1_325440 [Acanthamoeba castellanii str. Neff] diamond 141 63.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;