RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA789095" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA789095 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21173691 21173691 PRJNA789095_P_NODE_59537_length_264_cov_3.450262_g58203_i0 PRJNA789095 59537 264 3.450262 9.10869168 Treponema 157 Bacteria Bacteria 167 1.5599999999999999e-47   NR MEL3906085.1 166 g58203 i0 93.2 2 88 6 100 0 1 264 267 354 MEL3906085.1 FliI/YscN family ATPase [Treponema sp.] diamond 528 167 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
26873393 26873393 PRJNA789095_P_NODE_74401_length_242_cov_1.532544_g73067_i0 PRJNA789095 74401 242 1.532544 3.70875648 Treponema 157 Bacteria Bacteria 138 1.03e-35   NR WP_006187611.1 69710 g73067 i0 88.3 2.90082644628099 77 8 94.2 1 228 1 11 87 WP_006187611.1 FlgD immunoglobulin-like domain containing protein [Treponema vincentii] diamond 702 138 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
28096024 28096024 PRJNA789095_P_NODE_74525_length_242_cov_0.911243_g73191_i0 PRJNA789095 74525 242 0.911243 2.20520806 Spirochaetia bacterium 2053615 Bacteria Bacteria 100 1.8e-25   NR MFO7729640.1 2053615 g73191 i0 67.5 0.991735537190083 80 24 99.2 1 240 1 19 96 MFO7729640.1 hypothetical protein [Spirochaetia bacterium] diamond 240 100 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
29642796 29642796 PRJNA789095_P_NODE_44410_length_303_cov_1.417391_g43076_i0 PRJNA789095 44410 303 1.417391 4.29469473 Spirochaetia bacterium 2053615 Bacteria Bacteria 84 1.39e-18   NR MFO7729640.1 2053615 g43076 i0 66.2 0.643564356435644 65 21 63.4 1 192 1 2 66 MFO7729640.1 hypothetical protein [Spirochaetia bacterium] diamond 195 84 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
30157482 30157482 PRJNA789095_P_NODE_72132_length_244_cov_5.988304_g70798_i0 PRJNA789095 72132 244 5.988304 14.61146176 root 1 Root_unresolved Root_unresolved 49.7 1.29e-4   NR WP_020004839.1 13264 g70798 i0 45.1 1.25409836065574 51 28 62.7 0 9 161 413 463 WP_020004839.1 ankyrin repeat domain-containing protein [Brachyspira innocens] diamond 306 50.1 0.992015968063872 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira innocens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;