RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA789095" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA789095 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24997121 24997121 PRJNA789095_P_NODE_42100_length_310_cov_3.021097_g40766_i0 PRJNA789095 42100 310 3.021097 9.3654007 Thermus 270 Bacteria Bacteria 73.6 3.41e-13   NR MFN3369850.1 275 g40766 i0 68.1 1.88709677419355 47 15 45.5 0 170 310 129 175 MFN3369850.1 hypothetical protein [Thermus sp.] diamond 585 73.6 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp.
30179979 30179979 PRJNA789095_P_NODE_51172_length_283_cov_1.357143_g49838_i0 PRJNA789095 51172 283 1.357143 3.84071469 Deinococcus enclensis 1049582 Bacteria Bacteria 143 3.0899999999999997e-37   NR WP_307467582.1 1049582 g49838 i0 71.7 0.975265017667845 92 26 97.5 0 3 278 725 816 WP_307467582.1 DUF4157 domain-containing protein [Deinococcus enclensis] diamond 276 143 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus enclensis
31381101 31381101 PRJNA789095_P_NODE_67276_length_250_cov_0.870056_g65942_i0 PRJNA789095 67276 250 0.870056 2.17514 uncultured Truepera sp. 543023 Bacteria Bacteria 140 2.67e-37   NR CAA9589084.1 543023 g65942 i0 83.1 0.996 83 14 99.6 0 249 1 156 238 CAA9589084.1 MAG: Probable poly(beta-D-mannuronate) O-acetylase [uncultured Truepera sp.] diamond 249 140 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera uncultured Truepera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;