RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA789095" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA789095 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12249783 12249783 PRJNA789095_P_NODE_28670_length_403_cov_0.933333_g27338_i0 PRJNA789095 28670 403 0.933333 3.76133199 Pedinophyceae sp. YPF-7 765719 Plants Plants 157 3.1799999999999998e-46   NR CAG9462620.1 765719 g27338 i0 69.1 7.08684863523573 123 36 90.1 2 401 39 22 144 CAG9462620.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 2856 157 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
29990603 29990603 PRJNA789095_P_NODE_28331_length_406_cov_3.231231_g26999_i0 PRJNA789095 28331 406 3.231231 13.11879786 Volvox africanus 51714 Plants Plants 62.8 7.31e-9   NR GIL61322.1 51714 g26999 i0 43.6 1.7512315270936 78 34 57.6 1 171 404 114 181 GIL61322.1 hypothetical protein Vafri_15795 [Volvox africanus] diamond 711 62.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
30022296 30022296 PRJNA789095_P_NODE_61551_length_260_cov_1.379679_g60217_i0 PRJNA789095 61551 260 1.379679 3.5871654 Trebouxia sp. A1-2 2608996 Plants Plants 56.2 8.25e-7   NR KAA6428686.1 2608996 g60217 i0 35.6 1.00384615384615 87 54 98.1 1 260 6 64 150 KAA6428686.1 MAG: putative importin-7 protein, partial [Trebouxia sp. A1-2] diamond 261 56.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;