RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA788929" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA788929 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14798247 14798247 PRJNA788929_P_NODE_48032_length_210_cov_12.189781_g47371_i0 PRJNA788929 48032 210 12.189781 25.5985401 Acholeplasmataceae 2146 Bacteria Bacteria 107 4.01e-25   NR WP_232034259.1 29552 g47371 i0 87.1 3.57142857142857 62 8 88.6 0 187 2 24 85 WP_232034259.1 class 1b ribonucleoside-diphosphate reductase subunit alpha [Haploplasma axanthum] diamond 750 107 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Haploplasma Haploplasma axanthum
27685871 27685871 PRJNA788929_P_NODE_7324_length_694_cov_24.199678_g6689_i0 PRJNA788929 7324 694 24.199678 167.94576532 Mycoplasmataceae bacterium 2685873 Bacteria Bacteria 111 5.82e-24   NR WNE41712.1 2685873 g6689 i0 59.3 0.35014409221902 81 33 35 0 301 59 583 663 WNE41712.1 MAG: Leucine--tRNA ligase [Mycoplasmataceae bacterium] diamond 243 111 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae   Mycoplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;