RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA788929" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA788929 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28538265 28538265 PRJNA788929_P_NODE_26227_length_311_cov_22.109244_g25566_i0 PRJNA788929 26227 311 22.109244 68.75974884 Apostichopus japonicus 307972 Echinodermata other_Eukaryota 55.5 2.85e-6   NR PIK56362.1 307972 g25566 i0 37.7 1.0225080385852101 106 41 81 4 8 259 725 827 PIK56362.1 putative lysosomal alpha-mannosidase [Apostichopus japonicus] diamond 318 55.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus
30243402 30243402 PRJNA788929_P_NODE_3992_length_1027_cov_53.821803_g3514_i0 PRJNA788929 3992 1027 53.821803 552.74991681 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 48.9 0.0259   NR XP_041473556.1 7654 g3514 i0 29.7 0.911392405063291 111 74 32.4 3 824 492 159 265 XP_041473556.1 centrosomal protein 43-like isoform X1 [Lytechinus variegatus] diamond 936 48.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;