RNAquarium Metadata Server
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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA788929" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA788929 · 13 ✖

analysis 1

  • diamond · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3320401 3320401 PRJNA788929_P_NODE_1603_length_1660_cov_38.093258_g1396_i0 PRJNA788929 1603 1660 38.093258 632.3480828 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 422 3.8e-139   NR XP_019614975.1 7741 g1396 i0 47 8.62590361445783 485 249 86.7 6 1606 167 1 482 XP_019614975.1 PREDICTED: protein disulfide-isomerase-like isoform X2 [Branchiostoma belcheri] diamond 14319 426 0.990610328638498 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
5873064 5873064 PRJNA788929_P_NODE_4085_length_1010_cov_213.812166_g3595_i0 PRJNA788929 4085 1010 213.812166 2159.5028766 Petromyzon marinus 7757 Chordata Chordata 283 6.46e-91   NR XP_032831682.1 7757 g3595 i0 57.5 11.3851485148515 259 107 76.3 2 70 840 1 258 XP_032831682.1 40S ribosomal protein S3a [Petromyzon marinus] diamond 11499 285 0.992982456140351 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
15242567 15242567 PRJNA788929_P_NODE_17252_length_399_cov_34.708589_g16593_i0 PRJNA788929 17252 399 34.708589 138.48727011 Metazoa 33208 Chordata Chordata 131 9.999999999999999e-33   NR XP_043553952.1 36176 g16593 i0 62 20.8947368421053 108 41 81.2 0 325 2 3 110 XP_043553952.1 diphthine--ammonia ligase isoform X2 [Chiloscyllium plagiosum] diamond 8337 131 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium plagiosum
26714422 26714422 PRJNA788929_P_NODE_49261_length_203_cov_5.923077_g48600_i0 PRJNA788929 49261 203 5.923077 12.02384631 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.4 5.14e-4   NR XP_040189257.1 8407 g48600 i0 54.1 8.68965517241379 37 17 54.7 0 201 91 582 618 XP_040189257.1 heat shock-related 70 kDa protein 2 isoform X1 [Rana temporaria] diamond 1764 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
26736769 26736769 PRJNA788929_P_NODE_7001_length_716_cov_59.345257_g6370_i0 PRJNA788929 7001 716 59.345257 424.91204012 Clavelina lepadiformis 159417 Chordata Chordata 69.3 1.58e-9   NR CAK8691441.1 159417 g6370 i0 41 1.21508379888268 100 51 41.9 2 140 439 435 526 CAK8691441.1 unnamed protein product [Clavelina lepadiformis] diamond 870 69.3 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
28515758 28515758 PRJNA788929_P_NODE_2967_length_1215_cov_42.215412_g2589_i0 PRJNA788929 2967 1215 42.215412 512.9172558 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 249 1.14e-72   NR XP_035676518.1 7739 g2589 i0 42.7 5.36543209876543 314 175 76.8 3 152 1084 25 336 XP_035676518.1 uncharacterized protein LOC118415774 [Branchiostoma floridae] diamond 6519 250 0.996 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
28705245 28705245 PRJNA788929_P_NODE_40387_length_245_cov_12.982558_g39726_i0 PRJNA788929 40387 245 12.982558 31.8072671 Metazoa 33208 Chordata Chordata 60.8 8.64e-9   NR XP_026721565.1 194338 g39726 i0 61.7 2.43673469387755 47 18 57.6 0 88 228 53 99 XP_026721565.1 peptidyl-prolyl cis-trans isomerase C [Athene cunicularia] diamond 597 61.2 0.993464052287582 Eukaryota Opisthokonta Metazoa Chordata Aves Strigiformes Strigidae Athene Athene cunicularia
29201240 29201240 PRJNA788929_P_NODE_15089_length_433_cov_22.975000_g14430_i0 PRJNA788929 15089 433 22.975 99.48175 Echinops telfairi 9371 Chordata Chordata 44.7 0.0464   NR XP_004710168.2 9371 g14430 i0 30.3 0.755196304849885 109 59 74.1 4 386 66 122 215 XP_004710168.2 ankyrin repeat domain-containing protein SOWAHD [Echinops telfairi] diamond 327 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia   Tenrecidae Echinops Echinops telfairi
29241901 29241901 PRJNA788929_P_NODE_2909_length_1225_cov_43.783854_g2535_i0 PRJNA788929 2909 1225 43.783854 536.3522115 Chordata 7711 Chordata Chordata 111 5.409999999999999e-23   NR XP_016006122.2 9407 g2535 i0 61.1 6.28897959183673 95 27 20.8 2 360 106 296 390 XP_016006122.2 tRNA (cytosine(38)-C(5))-methyltransferase isoform X2 [Rousettus aegyptiacus] diamond 7704 112 0.991071428571429 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
30022269 30022269 PRJNA788929_P_NODE_16011_length_418_cov_12.701449_g15352_i0 PRJNA788929 16011 418 12.701449 53.09205682 Dendropsophus ebraccatus 150705 Chordata Chordata 47.8 0.00421   NR XP_069840101.1 150705 g15352 i0 33.8 0.997607655502392 65 38 43.1 1 235 414 26 90 XP_069840101.1 transcription factor E4F1 isoform X1 [Dendropsophus ebraccatus] diamond 417 48.1 0.993762993762994 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Dendropsophus Dendropsophus ebraccatus
30148277 30148277 PRJNA788929_P_NODE_13132_length_474_cov_19.448878_g12475_i0 PRJNA788929 13132 474 19.448878 92.18768172 Heteronotia binoei 13085 Chordata Chordata 62.4 2.09e-9   NR XP_060092830.1 13085 g12475 i0 37.3 1.05063291139241 83 52 52.5 0 378 130 13 95 XP_060092830.1 cystatin-A-like [Heteronotia binoei] diamond 498 62.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Heteronotia Heteronotia binoei
30496181 30496181 PRJNA788929_P_NODE_43793_length_235_cov_7.969136_g43132_i0 PRJNA788929 43793 235 7.969136 18.7274696 Protopterus annectens 7888 Chordata Chordata 53.9 1.55e-6   NR XP_043937589.1 7888 g43132 i0 66.7 1.26382978723404 33 11 42.1 0 214 116 148 180 XP_043937589.1 sepiapterin reductase [Protopterus annectens] diamond 297 53.9 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
32361855 32361855 PRJNA788929_P_NODE_13379_length_468_cov_77.939241_g12722_i0 PRJNA788929 13379 468 77.939241 364.75564788 Phrynocephalus forsythii 171643 Chordata Chordata 94 1.04e-21   NR KAJ7320054.1 171643 g12722 i0 46.9 0.628205128205128 98 52 62.8 0 75 368 1 98 KAJ7320054.1 hypothetical protein JRQ81_019565 [Phrynocephalus forsythii] diamond 294 94 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Agamidae Phrynocephalus Phrynocephalus forsythii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;