RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA788929" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA788929 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8422866 8422866 PRJNA788929_P_NODE_7387_length_690_cov_150.565640_g6750_i0 PRJNA788929 7387 690 150.56564 1038.902916 Chlamydiales bacterium 2047757 Bacteria Bacteria 199 1.73e-61   NR MCP5470421.1 2047757 g6750 i0 66.5 0.68695652173913 158 48 67.4 2 56 520 1 156 MCP5470421.1 hypothetical protein [Chlamydiales bacterium] diamond 474 199 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
27053791 27053791 PRJNA788929_P_NODE_7442_length_687_cov_45.074919_g6803_i0 PRJNA788929 7442 687 45.074919 309.66469353 Chlamydiales bacterium 2047757 Bacteria Bacteria 201 6.06e-62   NR MCP5470421.1 2047757 g6803 i0 66 0.694323144104803 159 49 68.1 2 70 537 1 157 MCP5470421.1 hypothetical protein [Chlamydiales bacterium] diamond 477 201 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
29021204 29021204 PRJNA788929_P_NODE_39928_length_246_cov_15.317919_g39267_i0 PRJNA788929 39928 246 15.317919 37.68208074 Candidatus Protochlamydia 282132 Bacteria Bacteria 134 9.06e-36   NR WP_213106441.1 362787 g39267 i0 83.1 1.8780487804878 77 13 93.9 0 3 233 194 270 WP_213106441.1 amino acid permease [Candidatus Protochlamydia amoebophila] diamond 462 135 0.992592592592593 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;