RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA788929" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA788929 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28948738 28948738 PRJNA788929_P_NODE_7608_length_677_cov_31.930464_g6967_i0 PRJNA788929 7608 677 31.930464 216.16924128 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 143 2.28e-39   NR AAT09077.1 227086 g6967 i0 61.6 0.496307237813885 112 43 49.6 0 669 334 42 153 AAT09077.1 transcription factor BTF3 [Bigelowiella natans] diamond 336 143 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
30780389 30780389 PRJNA788929_P_NODE_46674_length_219_cov_10.061644_g46013_i0 PRJNA788929 46674 219 10.061644 22.03500036 Lotharella oceanica 641309 SAR_Eukaryotes SAR_Eukaryotes 60.5 2.61e-10   NR AIB09582.1 641309 g46013 i0 59.2 0.671232876712329 49 20 67.1 0 196 50 6 54 AIB09582.1 hypothetical protein M951_chr1100 [Lotharella oceanica] diamond 147 60.5 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Lotharella Lotharella oceanica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;