RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA788929" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA788929 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28285205 28285205 PRJNA788929_P_NODE_38126_length_250_cov_8.423729_g37465_i0 PRJNA788929 38126 250 8.423729 21.0593225 Helicobacter pylori 210 Bacteria Bacteria 40.4 0.0223   NR GAA6875668.1 210 g37465 i0 89.7 0.348 29 3 34.8 0 151 65 11 39 GAA6875668.1 hypothetical protein Kyoto206A_4490 [Helicobacter pylori] diamond 87 40.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30370116 30370116 PRJNA788929_P_NODE_45372_length_227_cov_6.772727_g44711_i0 PRJNA788929 45372 227 6.772727 15.37409029 Helicobacter pylori 210 Bacteria Bacteria 48.5 1.73e-5   NR GAA9217561.1 210 g44711 i0 90.9 0.290748898678414 22 2 29.1 0 161 96 1 22 GAA9217561.1 hypothetical protein Kyoto198A_3180 [Helicobacter pylori] diamond 66 48.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30622293 30622293 PRJNA788929_P_NODE_46933_length_218_cov_4.344828_g46272_i0 PRJNA788929 46933 218 4.344828 9.47172504 Helicobacter pylori 210 Bacteria Bacteria 40.8 0.0109   NR GAA6875668.1 210 g46272 i0 93.1 0.399082568807339 29 2 39.9 0 140 54 11 39 GAA6875668.1 hypothetical protein Kyoto206A_4490 [Helicobacter pylori] diamond 87 40.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;