RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA788929" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA788929 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12693911 12693911 PRJNA788929_P_NODE_27510_length_303_cov_4.147826_g26849_i0 PRJNA788929 27510 303 4.147826 12.56791278 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 102 3.45e-24   NR HLK60195.1 2739509 g26849 i0 65.9 1.68316831683168 85 29 84.2 0 278 24 16 100 HLK60195.1 4-hydroxy-tetrahydrodipicolinate reductase [Chthonomonadaceae bacterium] diamond 510 102 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium
19065853 19065853 PRJNA788929_P_NODE_21075_length_355_cov_10.400709_g20415_i0 PRJNA788929 21075 355 10.400709 36.92251695 Bacteria 2 Bacteria Bacteria 149 5.36e-39   NR MBS1721921.1 2033014 g20415 i0 98.7 8.99154929577465 76 1 64.2 0 26 253 196 271 MBS1721921.1 ATP-dependent Clp protease ATP-binding subunit [Armatimonadota bacterium] diamond 3192 149 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
19896570 19896570 PRJNA788929_P_NODE_8136_length_649_cov_10.166667_g7489_i0 PRJNA788929 8136 649 10.166667 65.98166883 Armatimonadota bacterium 2033014 Bacteria Bacteria 176 7.66e-51   NR MDQ2799084.1 2033014 g7489 i0 57.1 1.61787365177196 170 73 78.6 0 94 603 15 184 MDQ2799084.1 M48 family metalloprotease [Armatimonadota bacterium] diamond 1050 176 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
31349408 31349408 PRJNA788929_P_NODE_33276_length_271_cov_6.212121_g32615_i0 PRJNA788929 33276 271 6.212121 16.83484791 Fimbriimonas sp. 1936159 Bacteria Bacteria 138 4.18e-37   NR MDH4387253.1 1936159 g32615 i0 74.7 1.83763837638376 83 21 91.9 0 250 2 21 103 MDH4387253.1 cytochrome c oxidase subunit II [Fimbriimonas sp.] diamond 498 138 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;